These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_61#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 383 fasta sequence [AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGCCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAATTTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATTTGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACTAACACGAGCTAAATGGGTAACAA] [+] EMBL CD160279 [AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGCCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAATTTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATTTGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACTAACACGAGCTAAATGGGTAACAA] consensusID : consensus_61#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [CTCGGTACCCCAAANACTCTTGAGCTCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGC] [+] EMBL CD128755 [CTCGGTACCCCAAANACTCTTGAGCTCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_61#0 AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGT 60 consensus_61#1 -CTCGGTACCCCAAANACT----CTTGAGC-TCACCTTCTAATCGTCCCGGTTGCCGAGT 54 * ** ** ** **** * ***************************** consensus_61#0 CGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAAC 120 consensus_61#1 CGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAAC 114 ************************************************************ consensus_61#0 ATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAG 180 consensus_61#1 ATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAG 174 ************************************************************ consensus_61#0 CCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAAT 240 consensus_61#1 C----------------------------------------------------------- 175 * consensus_61#0 TTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATT 300 consensus_61#1 ------------------------------------------------------------ consensus_61#0 TGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACT 360 consensus_61#1 ------------------------------------------------------------ consensus_61#0 AACACGAGCTAAATGGGTAACAA 383 consensus_61#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||