cluster # 6100

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Schistosoma mansoni
cluster # 6100 cluster # 6100 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6100#0 length = 414 sequences # 1

consensus_6100#1 length = 343 sequences # 2
consensus_6100#2 length = 276 sequences # 1

consensusID : consensus_6100#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence

                              [CAAAAGACAACAGGCCATGTATTTGCCATGACGAGGATCACATTTGACCATTTGATTGGCTGGTTCGAAAACAGCATTGGTAATTTCAGCAACGGTCAATTGTTCGTGATACGCTTTTTCAGCACTGATGATCGGTGCATATGTTGCCAATGGAAAGTGAATACGTGGATATGGGACCAAATTGGTTTGAAATTCGGTCAAATCAACGTTCAATGCACCATCGAATCGAAGCGAAGCCGTGATTGATGAAACGATTTGAGCGATCAATCGATTCAAATTGGTATAAGTTGGTCGTTCAATATCCAAATTACGTCGGCAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCTGAATGTTCCAATGTTGTATGTGTTGTCAAAATTGAATTGTAAGGTTCGACGAC]

[+] EMBL CD090278             [CAAAAGACAACAGGCCATGTATTTGCCATGACGAGGATCACATTTGACCATTTGATTGGCTGGTTCGAAAACAGCATTGGTAATTTCAGCAACGGTCAATTGTTCGTGATACGCTTTTTCAGCACTGATGATCGGTGCATATGTTGCCAATGGAAAGTGAATACGTGGATATGGGACCAAATTGGTTTGAAATTCGGTCAAATCAACGTTCAATGCACCATCGAATCGAAGCGAAGCCGTGATTGATGAAACGATTTGAGCGATCAATCGATTCAAATTGGTATAAGTTGGTCGTTCAATATCCAAATTACGTCGGCAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCTGAATGTTCCAATGTTGTATGTGTTGTCAAAATTGAATTGTAAGGTTCGACGAC]




>consensus_6100#0
CAAAAGACAACAGGCCATGTATTTGCCATGACGAGGATCACATTTGACCATTTGATTGGC
TGGTTCGAAAACAGCATTGGTAATTTCAGCAACGGTCAATTGTTCGTGATACGCTTTTTC
AGCACTGATGATCGGTGCATATGTTGCCAATGGAAAGTGAATACGTGGATATGGGACCAA
ATTGGTTTGAAATTCGGTCAAATCAACGTTCAATGCACCATCGAATCGAAGCGAAGCCGT
GATTGATGAAACGATTTGAGCGATCAATCGATTCAAATTGGTATAAGTTGGTCGTTCAAT
ATCCAAATTACGTCGGCAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATC
TGAATGTTCCAATGTTGTATGTGTTGTCAAAATTGAATTGTAAGGTTCGACGAC

consensusID : consensus_6100#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 343
fasta sequence

                              [TTGAGCAATCAAACGATTCAAGTTGGTGTAAGTTGGTCGTTCGATATCCAAATTACGGCGACAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCGGAATGTTCGAGAGTTGTGTGTGTTGTCAAGATCGAGTTGTATGGTTCAACAACAGCAGTCGAAATTTGTGGTGCTGGATAAACGGCGAATTCTAATTTTGATTTTTTACCGTAGTCAACACTGAGACGTTCCATCAACAATGATGTAAAACCAGATCCAGTACCACCTCCGAAACTGTGAAAGATTAAAAATCCTTGAAGACCGGTACATTGNTCAGCCAATTTACGAATACGATCG]

[+] EMBL CD092503             [TTGAGCAATCAAACGATTCAAGTTGGTGTAAGTTGGTCGTTCGATATCCAAATTACGGCGACAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCGGAATGTTCGAGAGTTGTGTGTGTTGTCAAGATCGAGTTGTATGGTTCAACAACAGCAGTCGAAATTTGTGGTGCTGGATAAACGGCGAATTCTAATTTTGATTTTTTACCGTAGTCAACACTGAGACGTTCCATCAACAATGATGTAAAACCAGATCCAGTACCACCTCCGAAACTGTGAAAGATTAAAAATCCTTGAAGACCGGTACATTGNTCAGCCAATTTACGAATACGATCG]
[+] EMBL CD092346             [TTGAGCAATCAAGCGATTCAAGTTGGTGTAAGTTGGTCGTTCGATATCCAAATTACGGCGACAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCGGAATGTTCGAGAGTTGTGTGTGTTGTCAAGATCGAGTTGTATGGTTCAACAACAGCAGTCGAAATTTGTGGTGCTGGATAAACGG                                                                                                                                                        ]




>consensus_6100#1
TTGAGCAATCAAACGATTCAAGTTGGTGTAAGTTGGTCGTTCGATATCCAAATTACGGCG
ACAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCGGAATGTTCGAGAGT
TGTGTGTGTTGTCAAGATCGAGTTGTATGGTTCAACAACAGCAGTCGAAATTTGTGGTGC
TGGATAAACGGCGAATTCTAATTTTGATTTTTTACCGTAGTCAACACTGAGACGTTCCAT
CAACAATGATGTAAAACCAGATCCAGTACCACCTCCGAAACTGTGAAAGATTAAAAATCC
TTGAAGACCGGTACATTGNTCAGCCAATTTACGAATACGATCG

consensusID : consensus_6100#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [GACCAAATTGGTTTGAAATTCAGTCAAATCAACGTTCAAGGCACCATCGAATCGTAATGAAGCGGTGATCGATGAAACAATTTGAGCGATCAAACGATTCAAATTCGTGTAAGTTGGTCGTTCAATATCCAAATTTCGTCGACAAATATCATAAATAGCCTCATTATCGACCATGAAAGCACAATCAGAATGTTCGAGAGTTGTGTGAGTTGTCAAGATGGAGTTGTACGGTTCAACAACAGCAGTTGAAATTTGTGGTGCAGGATAAACGGCGAA]

[+] EMBL CD136445             [GACCAAATTGGTTTGAAATTCAGTCAAATCAACGTTCAAGGCACCATCGAATCGTAATGAAGCGGTGATCGATGAAACAATTTGAGCGATCAAACGATTCAAATTCGTGTAAGTTGGTCGTTCAATATCCAAATTTCGTCGACAAATATCATAAATAGCCTCATTATCGACCATGAAAGCACAATCAGAATGTTCGAGAGTTGTGTGAGTTGTCAAGATGGAGTTGTACGGTTCAACAACAGCAGTTGAAATTTGTGGTGCAGGATAAACGGCGAA]




>consensus_6100#2
GACCAAATTGGTTTGAAATTCAGTCAAATCAACGTTCAAGGCACCATCGAATCGTAATGA
AGCGGTGATCGATGAAACAATTTGAGCGATCAAACGATTCAAATTCGTGTAAGTTGGTCG
TTCAATATCCAAATTTCGTCGACAAATATCATAAATAGCCTCATTATCGACCATGAAAGC
ACAATCAGAATGTTCGAGAGTTGTGTGAGTTGTCAAGATGGAGTTGTACGGTTCAACAAC
AGCAGTTGAAATTTGTGGTGCAGGATAAACGGCGAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6100#0      CAAAAGACAACAGGCCATGTATTTGCCATGACGAGGATCACATTTGACCATTTGATTGGC 60
consensus_6100#2      ------------------------------------------------------------
consensus_6100#1      ------------------------------------------------------------
                                                                                  

consensus_6100#0      TGGTTCGAAAACAGCATTGGTAATTTCAGCAACGGTCAATTGTTCGTGATACGCTTTTTC 120
consensus_6100#2      ------------------------------------------------------------
consensus_6100#1      ---TTGAGCAATCAAACGATTCAAGTTGGTGTAAGTTGGTCGTTCGATATCCAAATTACG 57
                                                                                  

consensus_6100#0      AGCACTGATG--ATCGGTGCATATGTTGCCAATGGAAAGTGAATACGTGGATATGGGACC 178
consensus_6100#2      --------------------------------------------------------GACC 4
consensus_6100#1      GCGACAAATGTCATAGATGGCCTCATTGTCAACCATAAAAGCACAATCGGA---ATGTTC 114
                                                                              *  *

consensus_6100#0      AAATTGGTTTGAAATTCGGTCAAATCAACGTTCAATGCACCATCGAATCGAAGCGAAGCC 238
consensus_6100#2      AAATTGGTTTGAAATTCAGTCAAATCAACGTTCAAGGCACCATCGAATCGTAATGAAGCG 64
consensus_6100#1      GAG--AGTTGTGTGTGTTGTCAAGATCGAGTT----GTATGGTTCAACAACAGC--AGTC 166
                       *    ***     *   *****      ***    * *   *  **    *    **  

consensus_6100#0      GTGATTGATGAAACGATTTGAGCGATCAATCGATTCAAATTGGTATAAGTTGGT-CGTTC 297
consensus_6100#2      GTGATCGATGAAACAATTTGAGCGATCAAACGATTCAAATTCGTGTAAGTTGGT-CGTTC 123
consensus_6100#1      GAAATTTGTGGTGC----TGGATAAACGGCGAATTCTAATTTTGATTTTTTACCGTAGTC 222
                      *  **   **   *    **    * *     **** ****    *   **       **

consensus_6100#0      AATATCCAAA--TTACGTCGGCAAATGT-CATAGATGGCCTCATTGTCAACCATAAAA-- 352
consensus_6100#2      AATATCCAAA--TTTCGTCGACAAATAT-CATAAATAGCCTCATTATCGACCATGAAA-- 178
consensus_6100#1      AACACTGAGACGTTCCATCAACAATGATGTAAAACCAGATCCAGTACCACCTCCGAAACT 282
                      ** *   * *  ** * **  ***   *  * *    *   ** *  *  *    ***  

consensus_6100#0      --GCACAATCTGAATGTTCCAATGTTGTATGTGTTGTCAAAATTGAATTGTAAGGTTCGA 410
consensus_6100#2      --GCACAATCAGAATGTTCGAGAGTTGTGTGAGTTGTCAAGATGGAGTTGTACGGTTCAA 236
consensus_6100#1      GTGAAAGATTAAAAATCCTTGAAGACCGGTACATTGNTCAGCC--AATTTACGAATACGA 340
                        * *  **   **         *     *   ***   *     * **      * * *

consensus_6100#0      CGAC------------------------------------ 414
consensus_6100#2      CAACAGCAGTTGAAATTTGTGGTGCAGGATAAACGGCGAA 276
consensus_6100#1      TCG------------------------------------- 343