cluster # 6103

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Schistosoma mansoni
cluster # 6103 cluster # 6103 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6103#0 length = 527 sequences # 2

consensus_6103#1 length = 464 sequences # 1
consensus_6103#2 length = 438 sequences # 1

consensusID : consensus_6103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [AGGATCTTAAGTCACCAGTTCAAATTAAACAACAACATTCCAGTAAACAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGATGATATCCATATTGGGGTTCCTGGACCTTTAGGAGAAATGTATTTTAATCATAATAGTGATAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAAGATGAGAATGATGAATTAGACGAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGGACGACGATGATGACGATGATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACTACATTCCAGTAAACAATCAATTATTAATGCTAATAGTTCAACATCTGTGGTGTATAATCATTCAAATGAGTTCACTGAAGGTGAGTGCATGACTTACTTAGGACTATAAATCATCTAGATGCTTTATTCTATATGTATTATCATTCGGTTAAAATTAACCAACTAGAAACGTTTTTAGCATTGGGTCAGCTATAAGACATATTT]

[+] EMBL CD186990             [AGGATCTTAAGTCACCAGTTCAAATTAAACAACAACATTCCAGTAAACAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGATGATATCCATATTGGGGTTCCTGGACCTTTAGGAGAAATGTATTTTAATCATAATAGTGATAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAAGATGAGAATGATGAATTAGACGA                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD197182             [                                                                                                         CCTGGACCTTTAGGAGAAATGTATTTGAATCATAATAGTGAAAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAAGATGAGAATGATGAATTAGACAAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGGACGACGATGATGACGATGATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACTACATTCCAGTAAACAATCAATTATTAATGCTAATAGTTCAACATCTGTGGTGTATAATCATTCAAATGAGTTCACTGAAGGTGAGTGCATGACTTACTTAGGACTATAAATCATCTAGATGCTTTATTCTATATGTATTATCATTCGGTTAAAATTAACCAACTAGAAACGTTTTTAGCATTGGGTCAGCTATAAGACATATTT]




>consensus_6103#0
AGGATCTTAAGTCACCAGTTCAAATTAAACAACAACATTCCAGTAAACAATCAATCTGAA
GAAAAAGATCAATTTAAAATATCTGATGATATCCATATTGGGGTTCCTGGACCTTTAGGA
GAAATGTATTTTAATCATAATAGTGATAGCGATGATGATTATTTCAATAGTGATGATAAT
AAAGATGATGATAAAGATGAGAATGATGAATTAGACGAAAGCAAAGACAATATTCACAGT
AGAGGTTACTGTAACAGTGATGAGGACGACGATGATGACGATGATGAAGAAGATCTTAAG
TCACCAGTTCAAATTAAACAACTACATTCCAGTAAACAATCAATTATTAATGCTAATAGT
TCAACATCTGTGGTGTATAATCATTCAAATGAGTTCACTGAAGGTGAGTGCATGACTTAC
TTAGGACTATAAATCATCTAGATGCTTTATTCTATATGTATTATCATTCGGTTAAAATTA
ACCAACTAGAAACGTTTTTAGCATTGGGTCAGCTATAAGACATATTT

consensusID : consensus_6103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [AGAATGATGAATTAGNCTANAGCAGAGNCNATATTCCCAGTAGAGGCTACTGTACCAGTGATGAGGNCGACGATGATGNCGATGATGAAGTAGATCTTAAGTCTCCAGTTCGAATTAAACAACAACATTCCAGTACACAATCGATTACTAATGCTAATAGTTCAACATCTGTGGTGTATAATCATTCAAATGAGTTCGCTAAAGAAAATATAGAAATGAAGTTATTTAATGGTAATGAAGGAATGGATCTAACCGTACACTATACATCGTCTGGATCTATTGTAACATTATTAAATGCAAATTTTTTAAAAAAGTAAGCTATCTATCGCCTTACACAGATATATGTGACATGAATATGTATCCGTATAAAAATGTGTTATGCAACAAGTGATGTTTTTTTTTATCTCTATTGATGATGATGATGATGATCCCGGCTGCATAACAATTTGTAACTGGTATCGCTG]

[-] EMBL CD190530             [AGAATGATGAATTAGNCTANAGCAGAGNCNATATTCCCAGTAGAGGCTACTGTACCAGTGATGAGGNCGACGATGATGNCGATGATGAAGTAGATCTTAAGTCTCCAGTTCGAATTAAACAACAACATTCCAGTACACAATCGATTACTAATGCTAATAGTTCAACATCTGTGGTGTATAATCATTCAAATGAGTTCGCTAAAGAAAATATAGAAATGAAGTTATTTAATGGTAATGAAGGAATGGATCTAACCGTACACTATACATCGTCTGGATCTATTGTAACATTATTAAATGCAAATTTTTTAAAAAAGTAAGCTATCTATCGCCTTACACAGATATATGTGACATGAATATGTATCCGTATAAAAATGTGTTATGCAACAAGTGATGTTTTTTTTTATCTCTATTGATGATGATGATGATGATCCCGGCTGCATAACAATTTGTAACTGGTATCGCTG]




>consensus_6103#1
AGAATGATGAATTAGNCTANAGCAGAGNCNATATTCCCAGTAGAGGCTACTGTACCAGTG
ATGAGGNCGACGATGATGNCGATGATGAAGTAGATCTTAAGTCTCCAGTTCGAATTAAAC
AACAACATTCCAGTACACAATCGATTACTAATGCTAATAGTTCAACATCTGTGGTGTATA
ATCATTCAAATGAGTTCGCTAAAGAAAATATAGAAATGAAGTTATTTAATGGTAATGAAG
GAATGGATCTAACCGTACACTATACATCGTCTGGATCTATTGTAACATTATTAAATGCAA
ATTTTTTAAAAAAGTAAGCTATCTATCGCCTTACACAGATATATGTGACATGAATATGTA
TCCGTATAAAAATGTGTTATGCAACAAGTGATGTTTTTTTTTATCTCTATTGATGATGAT
GATGATGATCCCGGCTGCATAACAATTTGTAACTGGTATCGCTG

consensusID : consensus_6103#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [TGGTTAGATCCAGATGAAGAATCTGAACATAATGATAATGCTAATAGTAATAGTATTTATGATCAGAATAATAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGATGATATCCATATTGGGGTTCCTGGACCTTTAGGAGAAATGTATTTTAATCATAATAGTGATAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAAGATGAGAATGATGAATTAGACAAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGGACGACGATGATGACGATGATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACAACATTCCAGTAAACAATCAATTATTAATGCTAATAGTTCAACAGAAAGATAAATTCAAACTAGTCAGCTTTTCATGCATTAGATTATTGCT]

[-] EMBL CD196785             [TGGTTAGATCCAGATGAAGAATCTGAACATAATGATAATGCTAATAGTAATAGTATTTATGATCAGAATAATAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGATGATATCCATATTGGGGTTCCTGGACCTTTAGGAGAAATGTATTTTAATCATAATAGTGATAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAAGATGAGAATGATGAATTAGACAAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGGACGACGATGATGACGATGATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACAACATTCCAGTAAACAATCAATTATTAATGCTAATAGTTCAACAGAAAGATAAATTCAAACTAGTCAGCTTTTCATGCATTAGATTATTGCT]




>consensus_6103#2
TGGTTAGATCCAGATGAAGAATCTGAACATAATGATAATGCTAATAGTAATAGTATTTAT
GATCAGAATAATAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGATGATATCCAT
ATTGGGGTTCCTGGACCTTTAGGAGAAATGTATTTTAATCATAATAGTGATAGCGATGAT
GATTATTTCAATAGTGATGATAATAAAGATGATGATAAAGATGAGAATGATGAATTAGAC
AAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGGACGACGATGAT
GACGATGATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACAACATTCCAGTAAA
CAATCAATTATTAATGCTAATAGTTCAACAGAAAGATAAATTCAAACTAGTCAGCTTTTC
ATGCATTAGATTATTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6103#0      -----------------AGGATCTTAAGTCACCAGTTCAAATTA-AACAACAACATTC-- 40
consensus_6103#2      TGGTTAGATCCAGATGAAGAATCTGAACATAATGATAATGCTAATAGTAATAGTATTTAT 60
consensus_6103#1      -AGAATGATGAATTAGNCTANAGCAGAGNCNATATTCCCAGTAGAGGCTACTGTACCAGT 59
                                                *        *     *       *    *     

consensus_6103#0      ---CAGTA-AACAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGAT--------G 88
consensus_6103#2      GATCAGAATAATAATCAATCTGAAGAAAAAGATCAATTTAAAATATCTGAT--------G 112
consensus_6103#1      GATGAGGNCGACGATGATGNCGATGATGAAG-TAGATCTTAAGTCTCCAGTTCGAATTAA 118
                          **    *  ** *    ** **  *** *  ** * ** * **   *         

consensus_6103#0      ATATCCATATTGGGGTTCCTGGACCTTTAGGAGAAATG-TATTTTAATCATAATAGTG-A 146
consensus_6103#2      ATATCCATATTGGGGTTCCTGGACCTTTAGGAGAAATG-TATTTTAATCATAATAGTG-A 170
consensus_6103#1      ACAACAACATTCCAGTACACAATCGATTACTAATGCTAATAGTTCAACATCTGTGGTGTA 178
                      * * * * ***   ** *     *  ***  *    *  ** ** **      * *** *

consensus_6103#0      TAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAA-GATGAGAATG 205
consensus_6103#2      TAGCGATGATGATTATTTCAATAGTGATGATAATAAAGATGATGATAAA-GATGAGAATG 229
consensus_6103#1      TAATCATTCAAATGAGTTCGCTAAAGAAAATA-TAGAAATGAAGTTATTTAATGGTAATG 237
                      **   **    ** * ***  **  **  *** ** * **** * **    ***  ****

consensus_6103#0      ATGAATTAGACGAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGG 265
consensus_6103#2      ATGAATTAGACAAAAGCAAAGACAATATTCACAGTAGAGGTTACTGTAACAGTGATGAGG 289
consensus_6103#1      AAGGAATGGATCTAACCGTACACTATACAT-CGTCTGGATCTATTGTAACATTATTAAAT 296
                      * * * * **   ** *  * ** ***    *    *    ** ******* *  * *  

consensus_6103#0      ACGACGATGATGACGATG-ATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACTA 324
consensus_6103#2      ACGACGATGATGACGATG-ATGAAGAAGATCTTAAGTCACCAGTTCAAATTAAACAACAA 348
consensus_6103#1      GCAAATTTTTTAAAAAAGTAAGCTATCTATCGCCTTACACAGATATATGTGACATGAATA 356
                       * *   *  * *  * * * *      ***      ***   *  *  * * *  *  *

consensus_6103#0      CATTCCAGTA-AACAATCAATTAT-TAATGC-TAATAGTTCAACATCT-GTGGTGTATAA 380
consensus_6103#2      CATTCCAGTA-AACAATCAATTAT-TAATGC-TAATAGTTCAACA----GAAAGATAAAT 401
consensus_6103#1      TGTATCCGTATAAAAATGTGTTATGCAACAAGTGATGTTTTTTTTTATCTCTATTGATGA 416
                        *  * *** ** ***   ****  **    * **  **                *   

consensus_6103#0      TCATTCAAATGAGTTCA-CTGAAGGTGAGTGCATGACTTACTTAGGACTATAAATCATCT 439
consensus_6103#2      TCAAACTAGTCAGCTTT-TCATGCATTAGATTATTGCT---------------------- 438
consensus_6103#1      TGATGATGATGATCCCGGCTGCATAACAATTTGTAACTGGTATCGCTG------------ 464
                      * *      * *               *     *  **                      

consensus_6103#0      AGATGCTTTATTCTATATGTATTATCATTCGGTTAAAATTAACCAACTAGAAACGTTTTT 499
consensus_6103#2      ------------------------------------------------------------
consensus_6103#1      ------------------------------------------------------------
                                                                                  

consensus_6103#0      AGCATTGGGTCAGCTATAAGACATATTT 527
consensus_6103#2      ----------------------------
consensus_6103#1      ----------------------------