Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6110 cluster # 6110       Sequences # 4       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6110#0 length = 1024 sequences # 4  
consensusID : consensus_6110#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1024
fasta sequence 
                              [AGTTAAAGTGCAAATCTATAGATGACGCACCGGACGTTGGCTGCCAAAAGGTTGATGTTGCCGAGGTTGAAGTGAATATCGAGAACTTAGCTCATAATACAGAAAAAGTCGATCCATCATGTTTTGATTTACTTTATGTCATCGGCCAAGGGTCTTTTGGAAAGGTATTTCTGGTGAGGAAAAACAATGGAAAGGATAAAGGAACTCTGTATGCAATGAAAGTGCTAAAGAAGGCTGTTTTGAAAGTTCGTGATAGACTGAGGACAAAGTTAGAAAGAGATATTCTAACTAGAATTAAACATCCATACATTGTTGATTTGCATTATGCTTTTCAAACTGAGGGAAAGGTGTATCTTATCCTGGAGTTTCTTAGGGGAGGGGATCTTTTCTCCCGCTTGTCCAAAGAGTACATGTTTACAGAAGACGATGTGAAATTCTACTTAGCTGAAATCGCATTGGCTCTTAACTATTTACACAGTCACGGGATAGTTTATCGAGATCTAAAACCTGAAAATGTTCTACTGAATGAAGATGGTCATGTACGTTTAACTGATTTTGGCCTATCAAAGGAGTCAATTTTCGAATCAGCTGGTGATCGAACGTATTCATTTTGTGGAACGGTTGAATATATGGCTCCAGAAGTTGTAAGTAGACATGGACATGGTACAGCTGCCGACTGGTGGAGTTTCGGGGTACTTATGTATGAATTACTTACTGGTATGCTGCCTTTTCATAGTGAGAGTAGAAAAGATACAATGCAAATGATTTTAAAAGCAAAATTATCAATGCCACAGTTTCTTAGTCCTTCAGCTCAAAGTTTACTACGTGCTCTTTTCAAGCGAACCCCATCGAATCGGCTAGGATATGGACCTGATGGATTTGAACATTTANAAAATCATGAATTTTTCAATACAATCAATTGGGATGATTTATTGAATGGTTGTATTCAACCACCATTTANACCTCCTTGCTCATCAATTAATGATATCTTAAATTTCGATTCAGAATATACATCACGTACACC]

[-] EMBL CD118533             [AGTTAAAGTGCAAATCTATAGATGACGCACCGGACGTTGGCTGCCAAAAGGTTGATGTTGCCGAGGTTGAAGTGAATATCGAGAACTTAGCTCATAATACAGAAAAAGTCGATCCATCATGTTTTGATTTACTTTATGTCATCGGCCAAGGGTCTTTTGGAAAGGTATTTCTGGTGAGGAAAAACAATGGAAAGGATAAAGGAACTCTGTATGCAATGAAAGTGCTAAAGAAGGCTGTTTTGAAAGTTCGTGATAGACTGAGGACAAAGTTAGAAAGAGATATTCTAACTAGAATTAAACATCCATACATTGTTGATTTGCATTATGCTTTTCAAACTGAGGGAAAGGTGTATCTTATCCTGGAGTTTCTTAGGGGAGGGGATCTTTTCTCCCGCTTGTCCAAAGAGTACATGTTTACAGAAGACGATGTGAAATTCTACTTAGCTGAAATCGCATTGGCTCTTAACTATTTACACAGTCACGGGATAGTTTATCGAGATCTAAAACCTGAAAATGTTCTACTGAATGAAGATGGTCATGTACGTTTAACTGATTTTGGCCTATCAAAGGAGTCAATTTTCGAATCAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD118580             [                                                                GGTTGAAGTGAATATCGAGAGCTTAGCTCATAATACAGAAAGAGTCGATCCATCATGTTTTGATNTACTNTATGTCATCGGCCAAGGGTCTTTTGGAAAGGTATTTCTGGTGAGGAAAAACAATGGAAAGGATAAAGGAACTCTGTATGCAATGAAAGTGCTAAAGAAGGCTGTTTTGAAAGTTCGTGATAGATTGAGGACAAAGTTAGAAAGAGATATTCTAACTAGAATTAAACATCCATACATTGTTGATTTGCATTATGCTTTTCAAACTGAGGGAAAGGTGTATCTTATCCTGGAGTTTCTTAGGGGAGGGGATCTTTTCTCCTGCTTGTCCAAAGAGTACATGTTTACAGAAGACGATGTGAAATTCTACTTAGCTGAAATCGCATTGGCTCTTAACTATTTACACAGTCACGGGATAGTTTATCGAGATCTAAAACCTGAAAATGTTCTACTGAATGAAGATGGTCATGTACGTTTAACTGATTTTGGCCTATCAAAGGAGTCAATTTTCGAATCAGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD154363             [                                                                                                                                                                                                                                                                                                                                                                                                                                               AAATTCTACTTAGCTGAAATCGCATTGGCTCTTAACTATTTACACAGTCACGGGATAGTTTATCGAGATCTAAAACCTGAAAATGTTCTACTGAATGAAGATGGTCATGTACGTTTAACTGATTTTGGCCTATCAAAGGAGTCAATTTTCGAATCAGCTGGTGATCGAACGTATTCATTTTGTGGAACGGTTGAATATATGGCTCCAGAAGTTGTAAGTAGACATGGACATGGTACAGCTGCCGACTGGTGGAGTTTCGGGGTACTTATGTATGAATTACTTACTGGTATGCTGCCTTTTCATAGTGAGAGTAGAAAAGATACAATGCAAATGATTTTAAAAGCAAAATTATCAATGCCACAGTTTCTTAGTCCTTCAGCTCAAAGTTTACTACGTGCTCTTTTCAAGCGAACCCCATCGAATCGGCTAGGATATGGACCTGATGGATTTGAACATTTANAAAATCATGAATTTTTCAATACAATCAATTGGGATGATTTATTGAATGGTTGTATTCAACCACCATTTANACCTCCTTGCTCATCAATTAATGATATCTTAAATTTCGATTCAGAATATACATCACGTACACC]
[+] EMBL CD116232             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCGACTGGTGGAGTTTCGGGGTACTTATGTATGAATTACTTACTGGTATGCTGCCTTTTCATAGTGAGAGTAGAAAAGATACAATGCAAATGATTTTAAAAGCAAAATTATCAATGCCACAGTTTCTTAGTCCacag                                                                                                                                                                                                                       ]




>consensus_6110#0
AGTTAAAGTGCAAATCTATAGATGACGCACCGGACGTTGGCTGCCAAAAGGTTGATGTTG
CCGAGGTTGAAGTGAATATCGAGAACTTAGCTCATAATACAGAAAAAGTCGATCCATCAT
GTTTTGATTTACTTTATGTCATCGGCCAAGGGTCTTTTGGAAAGGTATTTCTGGTGAGGA
AAAACAATGGAAAGGATAAAGGAACTCTGTATGCAATGAAAGTGCTAAAGAAGGCTGTTT
TGAAAGTTCGTGATAGACTGAGGACAAAGTTAGAAAGAGATATTCTAACTAGAATTAAAC
ATCCATACATTGTTGATTTGCATTATGCTTTTCAAACTGAGGGAAAGGTGTATCTTATCC
TGGAGTTTCTTAGGGGAGGGGATCTTTTCTCCCGCTTGTCCAAAGAGTACATGTTTACAG
AAGACGATGTGAAATTCTACTTAGCTGAAATCGCATTGGCTCTTAACTATTTACACAGTC
ACGGGATAGTTTATCGAGATCTAAAACCTGAAAATGTTCTACTGAATGAAGATGGTCATG
TACGTTTAACTGATTTTGGCCTATCAAAGGAGTCAATTTTCGAATCAGCTGGTGATCGAA
CGTATTCATTTTGTGGAACGGTTGAATATATGGCTCCAGAAGTTGTAAGTAGACATGGAC
ATGGTACAGCTGCCGACTGGTGGAGTTTCGGGGTACTTATGTATGAATTACTTACTGGTA
TGCTGCCTTTTCATAGTGAGAGTAGAAAAGATACAATGCAAATGATTTTAAAAGCAAAAT
TATCAATGCCACAGTTTCTTAGTCCTTCAGCTCAAAGTTTACTACGTGCTCTTTTCAAGC
GAACCCCATCGAATCGGCTAGGATATGGACCTGATGGATTTGAACATTTANAAAATCATG
AATTTTTCAATACAATCAATTGGGATGATTTATTGAATGGTTGTATTCAACCACCATTTA
NACCTCCTTGCTCATCAATTAATGATATCTTAAATTTCGATTCAGAATATACATCACGTA
CACC

clustalw multiple alignements is not computed in this case
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)