These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 469 fasta sequence [ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTTAGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACCTTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAGCTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGCACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACCTTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG] [+] EMBL AW017259 [ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTTAGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACCTTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAGCTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGCACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGC ] [+] EMBL CD160979 [ CCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGCACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAACTGAAGACCAGCACGCACGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACCTTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG] [-] EMBL CD063444 [ acccAACTCTCCCTACAGGGAACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACCTTTACCTCGT ] consensusID : consensus_6115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GGATTGGTTGTAGTCCTGAGTGTATTTCAGCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGTCAAGGTATACAGGGGACCTGCACCAACACGCTCACTGTAGTTTCCATTGCGCAATAGTCTGTGAACTGCTCCTACATGGTTCTGAAGACCAGCACGCATGGATCGTGACTTTTTACC] [-] EMBL AA791327 [GGATTGGTTGTAGTCCTGAGTGTATTTCAGCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGTCAAGGTATACAGGGGACCTGCACCAACACGCTCACTGTAGTTTCCATTGCGCAATAGTCTGTGAACTGCTCCTACATGGTTCTGAAGACCAGCACGCATGGATCGTGACTTTTTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6115#0 ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTT 60 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 AGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACC 120 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 TTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAG 180 consensus_6115#1 ------------------------------------------------------------ consensus_6115#0 CTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAG 240 consensus_6115#1 ------------------------GGATTGGTTGTAGTCCTGAG-TGTATTTCAG--CAG 33 **** ******** *** ** ***** *** consensus_6115#0 TTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTG-CAAGGTATACAGGGGCACCTG 299 consensus_6115#1 TTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGTCAAGGTATACAGGGG-ACCTG 92 ************************************** *************** ***** consensus_6115#0 CACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGA 359 consensus_6115#1 CACCAACACGCTCACTGTAGTTTCCATTGCGCAATAGTCTGTGAACTGCTCCTACATGGT 152 ************************* ******************* ****** ** consensus_6115#0 ACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCAC 419 consensus_6115#1 TCTGAAGACCAGCACGCATGGATCGTGACTTTTTACC----------------------- 189 ************************************ consensus_6115#0 CTTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG 469 consensus_6115#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||