cluster # 6115

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6115 cluster # 6115 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6115#0 length = 469 sequences # 3

consensus_6115#1 length = 189 sequences # 1

consensusID : consensus_6115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 469
fasta sequence

                              [ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTTAGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACCTTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAGCTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGCACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACCTTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG]

[+] EMBL AW017259             [ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTTAGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACCTTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAGCTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGCACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGC                                                    ]
[+] EMBL CD160979             [                                                                                                                                                                                                                                            CCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGCACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAACTGAAGACCAGCACGCACGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACCTTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG]
[-] EMBL CD063444             [                                                                                                                                                                                                                                                                                                                                                  acccAACTCTCCCTACAGGGAACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACCTTTACCTCGT                                       ]




>consensus_6115#0
ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTT
AGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACC
TTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAG
CTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAG
TTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGCAAGGTATACAGGGGCACCTGC
ACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGAA
CTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCACC
TTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG

consensusID : consensus_6115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [GGATTGGTTGTAGTCCTGAGTGTATTTCAGCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGTCAAGGTATACAGGGGACCTGCACCAACACGCTCACTGTAGTTTCCATTGCGCAATAGTCTGTGAACTGCTCCTACATGGTTCTGAAGACCAGCACGCATGGATCGTGACTTTTTACC]

[-] EMBL AA791327             [GGATTGGTTGTAGTCCTGAGTGTATTTCAGCAGTTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGTCAAGGTATACAGGGGACCTGCACCAACACGCTCACTGTAGTTTCCATTGCGCAATAGTCTGTGAACTGCTCCTACATGGTTCTGAAGACCAGCACGCATGGATCGTGACTTTTTACC]




>consensus_6115#1
GGATTGGTTGTAGTCCTGAGTGTATTTCAGCAGTTCAAGCACTTCAGCAGCTAGGTATTC
CATTACAGCTGTCAAGGTATACAGGGGACCTGCACCAACACGCTCACTGTAGTTTCCATT
GCGCAATAGTCTGTGAACTGCTCCTACATGGTTCTGAAGACCAGCACGCATGGATCGTGA
CTTTTTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6115#0      ACATATATTTAACTCTGTTTATGATGAATAACATCAATACTCTTGAGATTGAGACTTTTT 60
consensus_6115#1      ------------------------------------------------------------
                                                                                  

consensus_6115#0      AGCAGGCACATCGGATTTCTTCGGCAGAAGTGCATTTTGAATGTTAGGCAATACACCACC 120
consensus_6115#1      ------------------------------------------------------------
                                                                                  

consensus_6115#0      TTGAGCAATTGTGACTTTTCCCAGTAATGAGTTCAACTCTTCGTCGTTACAAATGGCAAG 180
consensus_6115#1      ------------------------------------------------------------
                                                                                  

consensus_6115#0      CTGCAAGTGCCTTGGAACGATTCGTGATTTCTTGTAGTCTCGAGCTGCATTTCCAGCCAG 240
consensus_6115#1      ------------------------GGATTGGTTGTAGTCCTGAG-TGTATTTCAG--CAG 33
                                               ****  ********  *** ** *****    ***

consensus_6115#0      TTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTG-CAAGGTATACAGGGGCACCTG 299
consensus_6115#1      TTCAAGCACTTCAGCAGCTAGGTATTCCATTACAGCTGTCAAGGTATACAGGGG-ACCTG 92
                      ************************************** *************** *****

consensus_6115#0      CACCAACACGCTCACTGTAGTTTCCTAAGCGCAATAGTCTGTGAACTCTCCCTACAGGGA 359
consensus_6115#1      CACCAACACGCTCACTGTAGTTTCCATTGCGCAATAGTCTGTGAACTGCTCCTACATGGT 152
                      *************************   *******************   ****** ** 

consensus_6115#0      ACTGAAGACCAGCACGCATGGATCGTGACTTTTTACCATGTTTATTACTTGTCTTTGCAC 419
consensus_6115#1      TCTGAAGACCAGCACGCATGGATCGTGACTTTTTACC----------------------- 189
                       ************************************                       

consensus_6115#0      CTTTACCTCGTCCAGACATTTCGAAGTTAAATCTGATGCCTTATGATAGG 469
consensus_6115#1      --------------------------------------------------