cluster # 6117

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Schistosoma mansoni
cluster # 6117 cluster # 6117 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6117#0 length = 474 sequences # 3

consensus_6117#1 length = 372 sequences # 1

consensusID : consensus_6117#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 474
fasta sequence

                              [GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTGCCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTCGTTATGTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC]

[+] EMBL CD119198             [GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTGCCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTCGTTATGTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC]
[+] EMBL CD119259             [GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTGCCGATTCATCGTGCAGTTGTTCGTGACGACGAATCTCAGTCGTTCAAAGATTCTCGTTATGTTT                                                  ]
[-] EMBL CD200536             [   CGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGct                                                                                                                                     ]




>consensus_6117#0
GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCT
TCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTT
TTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTG
TTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAA
ACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACC
CGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTG
CCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTCGTTAT
GTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC

consensusID : consensus_6117#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 372
fasta sequence

                              [GAGAACAAAAGTCTTGGTTATATGTTTCAAATTGTCACACATTCGAAAATAATTACAAAGACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTTACTTCAGCAGAGCAATGAAATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGAGAGCACACCAGGAGGACAAACTTTTGATGATATCTGCTTCCAGGTTGAGGATAGAACAGTTAGTGAGGTAGAAAATTCCGAAACAATAAAAAATGTATTACCCACATTCGGGTGTCTCATGTTAGCTCCTAGTTTCTTATTGGTTGACCGTCTCGGTGTAATTCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANACTTGCAGCTTCA]

[+] EMBL CD117891             [GAGAACAAAAGTCTTGGTTATATGTTTCAAATTGTCACACATTCGAAAATAATTACAAAGACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTTACTTCAGCAGAGCAATGAAATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGAGAGCACACCAGGAGGACAAACTTTTGATGATATCTGCTTCCAGGTTGAGGATAGAACAGTTAGTGAGGTAGAAAATTCCGAAACAATAAAAAATGTATTACCCACATTCGGGTGTCTCATGTTAGCTCCTAGTTTCTTATTGGTTGACCGTCTCGGTGTAATTCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANACTTGCAGCTTCA]




>consensus_6117#1
GAGAACAAAAGTCTTGGTTATATGTTTCAAATTGTCACACATTCGAAAATAATTACAAAG
ACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTTACTTCAGCAGAGCAATGAA
ATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGAGAGCACACCAGGAGGACAA
ACTTTTGATGATATCTGCTTCCAGGTTGAGGATAGAACAGTTAGTGAGGTAGAAAATTCC
GAAACAATAAAAAATGTATTACCCACATTCGGGTGTCTCATGTTAGCTCCTAGTTTCTTA
TTGGTTGACCGTCTCGGTGTAATTCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANA
CTTGCAGCTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6117#0      GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCT 60
consensus_6117#1      -------------GAGAACA----AAAGTCTTGGTTATATGTTTCAAAT--TGTCACACA 41
                                   *****      **  * ** ** * *   ** * **  ***    * 

consensus_6117#0      TCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTT 120
consensus_6117#1      TTCGAAAATAATTACAAAGACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTT 101
                      *      **         ** *  * *   ** *  *  ***  * *** **      **

consensus_6117#0      TTTTCACTTGTACAGTCAAATTAG-----TTGTACGCAAGTCCAACAGCAGACTGGATTC 175
consensus_6117#1      ACTTCAGCAGAGCAATGAAATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGA 161
                        ****   *  ** * ****        **** * * * * *** **       ***  

consensus_6117#0      CTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGA 235
consensus_6117#1      GAGCACACCAGGAGGACAAACTTTTGATGATATCTGCTTCCAGGT-TGAGGATAGAACAG 220
                        *         * * *   *** *   *** ***** * *** * **    * ***   

consensus_6117#0      TTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCA 295
consensus_6117#1      TTAG----TGAGGT----AGAAAATTCCGAAACAATAAAAAATGTATTACC-CACATTCG 271
                      **        *  *    ***  **     *** **     **  *** *  ****  * 

consensus_6117#0      GCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAG 355
consensus_6117#1      G-GTGTCTCATGTTAGCTCCTAGT-TTCTTA------TTGGTTGACCGTCTCGGTGTAAT 323
                      *      * **   * **  * *  ******      **  **** *      *** ** 

consensus_6117#0      AAGTGCCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTC 415
consensus_6117#1      TCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANACTTGCAGC--TTCA--------- 372
                           *  **  *   *    *  ***  *   *  * ** ***   ****         

consensus_6117#0      GTTATGTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC 474
consensus_6117#1      -----------------------------------------------------------