These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 474 fasta sequence [GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTGCCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTCGTTATGTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC] [+] EMBL CD119198 [GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTGCCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTCGTTATGTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC] [+] EMBL CD119259 [GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAGAAGTGCCGATTCATCGTGCAGTTGTTCGTGACGACGAATCTCAGTCGTTCAAAGATTCTCGTTATGTTT ] [-] EMBL CD200536 [ CGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCTTCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTTTTTTCACTTGTACAGTCAAATTAGTTGTACGCAAGTCCAACAGCAGACTGGATTCCTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGATTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCAGCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGct ] consensusID : consensus_6117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence [GAGAACAAAAGTCTTGGTTATATGTTTCAAATTGTCACACATTCGAAAATAATTACAAAGACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTTACTTCAGCAGAGCAATGAAATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGAGAGCACACCAGGAGGACAAACTTTTGATGATATCTGCTTCCAGGTTGAGGATAGAACAGTTAGTGAGGTAGAAAATTCCGAAACAATAAAAAATGTATTACCCACATTCGGGTGTCTCATGTTAGCTCCTAGTTTCTTATTGGTTGACCGTCTCGGTGTAATTCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANACTTGCAGCTTCA] [+] EMBL CD117891 [GAGAACAAAAGTCTTGGTTATATGTTTCAAATTGTCACACATTCGAAAATAATTACAAAGACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTTACTTCAGCAGAGCAATGAAATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGAGAGCACACCAGGAGGACAAACTTTTGATGATATCTGCTTCCAGGTTGAGGATAGAACAGTTAGTGAGGTAGAAAATTCCGAAACAATAAAAAATGTATTACCCACATTCGGGTGTCTCATGTTAGCTCCTAGTTTCTTATTGGTTGACCGTCTCGGTGTAATTCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANACTTGCAGCTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6117#0 GGGCGCGTATATCGAGAATGTCGCAAGTTGTTTGTCAAAGTATTTATATTATGTTGTCCT 60 consensus_6117#1 -------------GAGAACA----AAAGTCTTGGTTATATGTTTCAAAT--TGTCACACA 41 ***** ** * ** ** * * ** * ** *** * consensus_6117#0 TCTTTTGATCTCGTGGTTGATTGGGTACATTCGTTCCGTCCACTATACTTTTTGGTGTTT 120 consensus_6117#1 TTCGAAAATAATTACAAAGACTCCGAAGTGTCATATCAGCCATGAAACTATTGTTCACTT 101 * ** ** * * * ** * * *** * *** ** ** consensus_6117#0 TTTTCACTTGTACAGTCAAATTAG-----TTGTACGCAAGTCCAACAGCAGACTGGATTC 175 consensus_6117#1 ACTTCAGCAGAGCAATGAAATAGTCGAGCTTGTTCACCAATTCAAAAGTTCTGGAGATGA 161 **** * ** * **** **** * * * * *** ** *** consensus_6117#0 CTGTGTTAATTTATGTCGCTCTTCTCCCGATTTCTGCCTTCAGATGTGCTTTTGGAAAGA 235 consensus_6117#1 GAGCACACCAGGAGGACAAACTTTTGATGATATCTGCTTCCAGGT-TGAGGATAGAACAG 220 * * * * *** * *** ***** * *** * ** * *** consensus_6117#0 TTTAAACTCAAAATTTCCAGAGTATATTACAACCATGGGCTATTCATTTCTTCACACCCA 295 consensus_6117#1 TTAG----TGAGGT----AGAAAATTCCGAAACAATAAAAAATGTATTACC-CACATTCG 271 ** * * *** ** *** ** ** *** * **** * consensus_6117#0 GCACCCGTTATCACAACTGTTTGCATTCTTATGATATTTCTTTGATCCCGCTTGTGAAAG 355 consensus_6117#1 G-GTGTCTCATGTTAGCTCCTAGT-TTCTTA------TTGGTTGACCGTCTCGGTGTAAT 323 * * ** * ** * * ****** ** **** * *** ** consensus_6117#0 AAGTGCCGATTCATTGTGCAGTTGTTCGTGACGACGAATTTCAGTCGTTCAAAGATTCTC 415 consensus_6117#1 TCAGTCTCATCAACCCTCTGTTCTTTCACGCATAANACTTGCAGC--TTCA--------- 372 * ** * * * *** * * * ** *** **** consensus_6117#0 GTTATGTTTTCACCCATGATGACGAGAACAAAAGTCTTGGTTATATGCTTCAAATTGTC 474 consensus_6117#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||