cluster # 6119

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Schistosoma mansoni
cluster # 6119 cluster # 6119 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6119#0 length = 555 sequences # 3

consensus_6119#1 length = 486 sequences # 1

consensusID : consensus_6119#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 555
fasta sequence

                              [AAGAATTCGTTGTTCACTTCAACCAACCAAACAATTTTCAAGCCCCACTATCACTACTAATGATCAAACTTCATCACCATTGATAAGTTTTGATATTCATGAAAATTTTTACTCTCCACCTAGTTCTACTACAAATTTTAAAAATTATCGTGCTAACCGATGGAATCGTTTATTCATTGATCCTGTTAAAATTTATCCACGTCCTTTATTAGCTATAACATTGTATGATGTTTCATGTGAATGGAATATATATGGCGGCAATGATTTGTTACCTACTTCGTCAGTAACAACAACTCCATTGTTAGGCAATATCCCGTCCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTCTTCATCACCACTTAAAGATCTTACTCAAAAATTAACAACAACTTCATCTCGTTCAAATGAATCACTTCGAACTAGTAAGAATGCTACAAATATACGATCTGGTGGGAATATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGGTTATCGTTTTCGTCATGGTCAACCACTTATTAA]

[+] EMBL CD160054             [AAGAATTCGTTGTTCACTTCAACCAACCAAACAATTTTCAAGCCCCACTATCACTACTAATGATCAAACTTCATCACCATTGATAAGTTTTGATATTCATGAAAATTTTTACTCTCCACCTAGTTCTACTACAAATTTTAAAAATTATCGTGCTAACCGATGGTATCGTTTATTCATTGATCCTGTTAAAATTTATCCACGTCCTTTATTAGCTATAACATTGTATGATGTTTCATGTGAATGGAATATATATGGCGGCAATGATTTGTTACCTACTTCGTCAGTAACAACAACTCCATTGTTAGGCAATATCCCGTCCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTCTTCATCACCACTTAAAGATCTTACTCAAAAATTAACAACAACTTCATCTCGTTCAAATGAATCACTTC                                                                                                                   ]
[+] EMBL CD160071             [AAGAATTCGTTGTTCACTTCAACCAACCAAACAATTTTCAAGCCCCACTATCACTACTAATGATCAAACTTCATCACCATTGATAAGTTTTGATATTCATGAAAATTTTTACTCTCCACCTAGTTCTACTACAAATTTTAAAAATTATCGTGCTAACCGATGGAATCGTTTATTCATTGATCCTGTTAAAATTTATCCACGTCCTTTATTAGCTATAACATTGTATGATGTTTCATGTGAATGGAATATATATGGCGGCAATGATTTGTTACCTACTTCGTCAGTAACAACAACTCCATTGTTAGGCAATATCCCGTCCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTCTTCATCACCACTTAAAGATCTTACTCCAAAATTAACAACAAATTCATCTCGT                                                                                                                                   ]
[+] EMBL CD160277             [                                                                                     AGTTTTGATATTCATGAAAATTTTTACTCTCCACCTAGTTCTACTACAAATTTTAAAAATTATCGTGCTAACCGATGGAATCGTTTATTCATTGATCCTGTTAAAATTTATCCACGTCCTTTATTAGCTATAACATTGTATGATGTTTCATGTGAATGGAATATATATGGCGGCAATGATTTGTTACCTACTTCGTCAGTAACAACAACTCCATTGTTAGGCAATATCCCGTCCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTCTTCATCACCACTTAAAGATCTTACTCAAAAATTAACAACAACTTCATCTCGTTCAAGTGAATCACTTCGAACTAGTAAGAATGCTACAAATATACGATCTGGTGGGAATATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGGTTATCGTTTTCGTCATGGTCAACCACTTATTAA]




>consensus_6119#0
AAGAATTCGTTGTTCACTTCAACCAACCAAACAATTTTCAAGCCCCACTATCACTACTAA
TGATCAAACTTCATCACCATTGATAAGTTTTGATATTCATGAAAATTTTTACTCTCCACC
TAGTTCTACTACAAATTTTAAAAATTATCGTGCTAACCGATGGAATCGTTTATTCATTGA
TCCTGTTAAAATTTATCCACGTCCTTTATTAGCTATAACATTGTATGATGTTTCATGTGA
ATGGAATATATATGGCGGCAATGATTTGTTACCTACTTCGTCAGTAACAACAACTCCATT
GTTAGGCAATATCCCGTCCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCC
AGTATTATCTTCTTCATCACCACTTAAAGATCTTACTCAAAAATTAACAACAACTTCATC
TCGTTCAAATGAATCACTTCGAACTAGTAAGAATGCTACAAATATACGATCTGGTGGGAA
TATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGGTTATCGTTTTCGTCATGG
TCAACCACTTATTAA

consensusID : consensus_6119#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [TGATACCTACTTCAACAGTAACAGCAACTCCATTGTTAAGCAATATACCCGCTCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTATTCATCACCACTTAAAGATCTTACTCAAAAATTAACACCAACTTCATACTTGTTCAAATGACTCACTTCTAACTAGTACGAACGCTACAAATATACTATCTGGAGCGAATATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGACTGTCGATTTCGTCATGGACAACCACTTATTAATAAACCAAGTACCAGCGCAAGCCGCCTGTGCCAGCGATCCTGTTCGTATACGTTCGAATGAATCACGTTCGGAAAATATTTCATTACAATCTCCCAAGGATTCAGAAGGTATCCGATCTCGTCTAACGTTGTACTCACAAGGTGGCCTAAGACGTCAGCTATATAATTGTATTTCATTCAATATCTCANAATTAT]

[+] EMBL CD159420             [TGATACCTACTTCAACAGTAACAGCAACTCCATTGTTAAGCAATATACCCGCTCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTATTCATCACCACTTAAAGATCTTACTCAAAAATTAACACCAACTTCATACTTGTTCAAATGACTCACTTCTAACTAGTACGAACGCTACAAATATACTATCTGGAGCGAATATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGACTGTCGATTTCGTCATGGACAACCACTTATTAATAAACCAAGTACCAGCGCAAGCCGCCTGTGCCAGCGATCCTGTTCGTATACGTTCGAATGAATCACGTTCGGAAAATATTTCATTACAATCTCCCAAGGATTCAGAAGGTATCCGATCTCGTCTAACGTTGTACTCACAAGGTGGCCTAAGACGTCAGCTATATAATTGTATTTCATTCAATATCTCANAATTAT]




>consensus_6119#1
TGATACCTACTTCAACAGTAACAGCAACTCCATTGTTAAGCAATATACCCGCTCAATGAG
ATATCTACCCCTGTTCCACCACATAATAAATCCCCAGTATTATCTTATTCATCACCACTT
AAAGATCTTACTCAAAAATTAACACCAACTTCATACTTGTTCAAATGACTCACTTCTAAC
TAGTACGAACGCTACAAATATACTATCTGGAGCGAATATTTCACCCAATCAAATGTTAAA
ATCCTGTCCTAAACCTGACTGTCGATTTCGTCATGGACAACCACTTATTAATAAACCAAG
TACCAGCGCAAGCCGCCTGTGCCAGCGATCCTGTTCGTATACGTTCGAATGAATCACGTT
CGGAAAATATTTCATTACAATCTCCCAAGGATTCAGAAGGTATCCGATCTCGTCTAACGT
TGTACTCACAAGGTGGCCTAAGACGTCAGCTATATAATTGTATTTCATTCAATATCTCAN
AATTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6119#0      AAGAATTCGTTGTTCACTTCAACCAACCAAACAATTTTCAAGCCCCACTATCACTACTAA 60
consensus_6119#1      ------------------------------------------------------------
                                                                                  

consensus_6119#0      TGATCAAACTTCATCACCATTGATAAGTTTTGATATTCATGAAAATTTTTACTCTCCACC 120
consensus_6119#1      ------------------------------------------------------------
                                                                                  

consensus_6119#0      TAGTTCTACTACAAATTTTAAAAATTATCGTGCTAACCGATGGAATCGTTTATTCATTGA 180
consensus_6119#1      ------------------------------------------------------------
                                                                                  

consensus_6119#0      TCCTGTTAAAATTTATCCACGTCCTTTATTAGCTATAACATTGTATGATGTTTCATGTGA 240
consensus_6119#1      ------------------------------------------------------------
                                                                                  

consensus_6119#0      ATGGAATATATATGGCGGCAATGATTTGTTACCTACTTCGTCAGTAACAACAACTCCATT 300
consensus_6119#1      --------------------------TGATACCTACTTCAACAGTAACAGCAACTCCATT 34
                                                ** **********  ******** **********

consensus_6119#0      GTTAGGCAATAT-CCCGTCCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCC 359
consensus_6119#1      GTTAAGCAATATACCCGCTCAATGAGATATCTACCCCTGTTCCACCACATAATAAATCCC 94
                      **** ******* ****  *****************************************

consensus_6119#0      CAGTATTATCTTCTTCATCACCACTTAAAGATCTTACTCAAAAATTAACAACAACTTCAT 419
consensus_6119#1      CAGTATTATCTTATTCATCACCACTTAAAGATCTTACTCAAAAATTAACACCAACTTCAT 154
                      ************ ************************************* *********

consensus_6119#0      -CTCGTTCAAATGAATCACTTCGAACTAGTAAGAATGCTACAAATATACGATCTGGTGGG 478
consensus_6119#1      ACTTGTTCAAATGACTCACTTCTAACTAGTACGAACGCTACAAATATACTATCTGGAGCG 214
                       ** ********** ******* ******** *** ************* ****** * *

consensus_6119#0      AATATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGGTTATCGTTTTCGTCAT 538
consensus_6119#1      AATATTTCACCCAATCAAATGTTAAAATCCTGTCCTAAACCTGACTGTCGATTTCGTCAT 274
                      *******************************************  * *** *********

consensus_6119#0      GGTCAACCACTTATTAA------------------------------------------- 555
consensus_6119#1      GGACAACCACTTATTAATAAACCAAGTACCAGCGCAAGCCGCCTGTGCCAGCGATCCTGT 334
                      ** **************                                           

consensus_6119#0      ------------------------------------------------------------
consensus_6119#1      TCGTATACGTTCGAATGAATCACGTTCGGAAAATATTTCATTACAATCTCCCAAGGATTC 394
                                                                                  

consensus_6119#0      ------------------------------------------------------------
consensus_6119#1      AGAAGGTATCCGATCTCGTCTAACGTTGTACTCACAAGGTGGCCTAAGACGTCAGCTATA 454
                                                                                  

consensus_6119#0      --------------------------------
consensus_6119#1      TAATTGTATTTCATTCAATATCTCANAATTAT 486