cluster # 6127

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6127 cluster # 6127 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6127#0 length = 431 sequences # 2

consensus_6127#1 length = 303 sequences # 2

consensusID : consensus_6127#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 431
fasta sequence

                              [TTGGTTCTTATTGACCTTAAATCTGTCATTGTTTATTTCTTTGTTTTGGTTGTATCTCCTATTGGTTTGATTTTTGTTCCTATCTTCCTGCATAATTTTCTTGATCGGTTGATAGATTGGATTGATTTCAATATGTTTGTTTATTGCTGATTGACCTGAGTGCCGATTGATATAATAGCAGTTACATCTCTAATGGGGGAGCGTTGCTCATACGTAACTCAATGGATTAGTCGGCTCCTTAAAAATGTTTTCGCTTTGAATATATCTAACGTGTCGTTGTCGCAGAAAGCAGATGACCTGTGGATACCAAGAGGATTCACTATTAATATGGCCTATGTGGATAGGTACAGTGTAACCTAGTATTATCGACTTTTTGTCAAAATGGTGTAAATCCTGACTTTCCTAACTGTTTTTCTATGAAAGTGATCCTT]

[+] EMBL CD160206             [TTGGTTCTTATTGACCTTAAATCTGTCATTGTTTATTTCTTTGTTTTGGTTGTATCTCCTATTGGTTTGATTTTTGTTCCTATCTTCCTGCATAATTTTCTTGATCGGTTGATAGATTGGATTGATTTCAATATGTTTGTTTATTGCTGATTGACCTGAGTGCCGATTGATATAATAGCAGTTACATCTCTAATGGGGGAGCGTTGCTCATACGTAACTCAATGGATTAGTCGGCTCCTTAAAAATGTTTTCGCTTTGAATATATCT                                                                                                                                                                    ]
[+] EMBL CD159975             [ TGGTTCTTATTGACCTTAAATCTGTCATTGTTTATTTCTTTGTTTTGGTTGTATCTCCTATTGGTTTGATCTTTGTTCCTATCTTCCTGCATAATTTTCTTGATTGGTTGATAGATTGGATTGATTTCAATATGTTTGTTTATTGCTGATTGACCTGAGTGCCGATTGATATAATAGCAGTTACATCTCTAATGGGGGAGCGTTGCTCATACGTAACTCAATGGATTAGTCGGCTTTTTAAAAATGTTTTCGCTTTGAATATATCTAACGTGTCGTTGTCGCAGAAAGCAGATGACCTGTGGATACCAAGAGGATTCACTATTAATATGGCCTATGTGGATAGGTACAGTGTAACCTAGTATTATCGACTTTTTGTCAAAATGGTGTAAATCCTGACTTTCCTAACTGTTTTTCTATGAAAGTGATCCTT]




>consensus_6127#0
TTGGTTCTTATTGACCTTAAATCTGTCATTGTTTATTTCTTTGTTTTGGTTGTATCTCCT
ATTGGTTTGATTTTTGTTCCTATCTTCCTGCATAATTTTCTTGATCGGTTGATAGATTGG
ATTGATTTCAATATGTTTGTTTATTGCTGATTGACCTGAGTGCCGATTGATATAATAGCA
GTTACATCTCTAATGGGGGAGCGTTGCTCATACGTAACTCAATGGATTAGTCGGCTCCTT
AAAAATGTTTTCGCTTTGAATATATCTAACGTGTCGTTGTCGCAGAAAGCAGATGACCTG
TGGATACCAAGAGGATTCACTATTAATATGGCCTATGTGGATAGGTACAGTGTAACCTAG
TATTATCGACTTTTTGTCAAAATGGTGTAAATCCTGACTTTCCTAACTGTTTTTCTATGA
AAGTGATCCTT

consensusID : consensus_6127#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 303
fasta sequence

                              [AGAATTCCAAAAAAAGTTGGATGAAGTATGCCAAAAGATGGATAAACTGGCAGAATTAAATGGGGATTCATCTGTAAAATCAGCAACGAAAAAGAAAAAGAAACATAAAAAGAAGACTGGAAAATGCACAAATGGTGACGATGAGACCGTGATGAAGGAAAATGAGACGGGAGACGCCTCAGTTAACTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAAGGAGAAAAACATCTAGTG]

[+] EMBL CD111806             [AGAATTCCAAAAAAAGTTGGATGAAGTATGCCAAAAGATGGATAAACTGGCAGAATTAAATGGGGATTCATCTGTAAAATCAGCAACGAAAAAGAAAAAGAAACATAAAAAGAAGACTGGAAAATGCACAAATGGTGACGATGAGACCGTGATGAAGGAAAATGAGACGGGAGACGCCTCAGTTAACTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGAT                                             ]
[+] EMBL CD110819             [agaaccagAAAAAAAGTTGGATGAAGTATGCCAAAAGATGGATAAACTGGCAGAATTAAATGGGGATTCATCTGTAAAATCAGCAACGAAAAAGAAAAAGAAACATAAAAAGAAGACTGGAAAATGCACAAATGGTGACGATGAGACCGTGATGAAGGAAAATGAGACGGGAGACGCCTCAGTTAACTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAAGGAGAAAAACATCTAGTG]




>consensus_6127#1
AGAATTCCAAAAAAAGTTGGATGAAGTATGCCAAAAGATGGATAAACTGGCAGAATTAAA
TGGGGATTCATCTGTAAAATCAGCAACGAAAAAGAAAAAGAAACATAAAAAGAAGACTGG
AAAATGCACAAATGGTGACGATGAGACCGTGATGAAGGAAAATGAGACGGGAGACGCCTC
AGTTAACTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTG
AGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAAGGAGAAAAACATCTA
GTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6127#0      TTGGTTCTTATTGACCTTAAATCTGTCATTGTTTATTTCTTTGTTTTGGTTGTATCTCCT 60
consensus_6127#1      ------------------------------------------------------------
                                                                                  

consensus_6127#0      ATTGGTTTGATTTTTGTTCCTATCTTCCTGCATAATTTTCTTGATCGGTTGATAGATTGG 120
consensus_6127#1      -------------------------------AGAATTCCAAAAAAAGTTGGATGAAGT-- 27
                                                     * ****      *  * * ***  * *  

consensus_6127#0      ATTGATTTCAATATGTTTGTTTATTGCTGATTGACCTGAGTGCCGATTGAT--ATAATAG 178
consensus_6127#1      ----ATGCCAAAAGATGGATAAA---CTGGCAGAATTAAATGGGGATTCATCTGTAAAAT 80
                          **  *** *  *   *  *   ***   **  * * **  **** **   *** * 

consensus_6127#0      CAGTTACATCTCTAATGGGGGAGCGTTGCTCATACGTAACTCAATGGATTAGTCGGCTCC 238
consensus_6127#1      CAGCAACGAAAAAGAAAAAGAAACATAAAAAGAAGACTGGAAAATGCACAAATGGTGACG 140
                      ***  **       *    * * * *       *        **** *  * * *   * 

consensus_6127#0      TTAAAAATGTTTTCGCTTTGAAT-ATATCTAACGTGTCGTTGTCGCAGAAAGCAGATGAC 297
consensus_6127#1      ATGAGACCGTGATGAAGGAAAATGAGACGGGAGACGCCTCAGTTAACTGTCGT-GATGGT 199
                       * * *  **  *       *** * *    *   * *   **        *  ****  

consensus_6127#0      CTGTGGATACCAAGAGGATTCACTATTAATATGGCCTATGTGGATAGGTACAGTGTAACC 357
consensus_6127#1      CGATGTAGTTGACTTGAGTTTTCTACTTATG-AGTAATTGTGAGGTGATAGTGTGTGGAT 258
                      *  ** *    *   *  **  *** * **   *    ****    * **  ****    

consensus_6127#0      TAGTATTATCGACTTTTTGT-CAAAATGGTGTAAATCCTGACTTTCCTAACTGTTTTTCT 416
consensus_6127#1      TGATGGTATTGGATCAGGAAGCGAGAAGGAGAAAAACATCTAGTG--------------- 303
                      *  *  *** *  *       * * * ** * *** * *    *                

consensus_6127#0      ATGAAAGTGATCCTT 431
consensus_6127#1      ---------------