cluster # 6136

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Schistosoma mansoni
cluster # 6136 cluster # 6136 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6136#0 length = 285 sequences # 2

consensus_6136#1 length = 199 sequences # 2

consensusID : consensus_6136#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 285
fasta sequence

                              [GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC]

[+] EMBL BG932225             [GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC]
[+] EMBL BG932337             [GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCcg      ]




>consensus_6136#0
GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCTTGCGAT
TTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTT
AATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTT
TTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGATT
ACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC

consensusID : consensus_6136#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 199
fasta sequence

                              [TACTCTAGAGGATCCCAGCAATCGCTGATGAGGCATCAATCGCTGATGAGGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCATGCCTCATC]

[+] EMBL CD129899             [TACTCTAGAGGATCCCAGCAATCGCTGATGAGGCATCAATCGCTGATGAGGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCATGCCTCATC]
[+] EMBL CD063609             [                                                           CAGCAACTATCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTC                    ]




>consensus_6136#1
TACTCTAGAGGATCCCAGCAATCGCTGATGAGGCATCAATCGCTGATGAGGCAATGCTTC
AGCATCTCTCAAACGTCTTTCTTCCAAAGTTAATCCCTTATTCCCATCCTTTTGACTACT
AGCTTTAGACTTCCTCTGTTCACTCTGTTTTTTCAAATTTTTCTCTCTAGCTAAATCTCT
TTGGTTTCCATGCCTCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6136#0      GCGAAAAACTGGTACGTCGATAAGCATGTACTTCATGCCTTCGGAACAGACGCT--TGCG 58
consensus_6136#1      ----------------------------TACTCTAGAGGATCCCAGCAATCGCTGATGAG 32
                                                  ****  *     **  * **  ****  ** *

consensus_6136#0      ATTTGGCTTGCTGTTTTGCTCGCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAG 118
consensus_6136#1      GCATCAATCGCTGATGAG---GCAATGCTTCAGCATCTCTCAAACGTCTTTCTTCCAAAG 89
                         *   * **** *  *   ***************************************

consensus_6136#0      TTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTT 178
consensus_6136#1      TTAATCCCTTATTCCCATCCTTTTGACTACTAGCTTTAGACTTCCTCTGTTCACTCTGTT 149
                      ************************************************************

consensus_6136#0      TTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCACGCGTCATATAAACGACGA 238
consensus_6136#1      TTTTCAAATTTTTCTCTCTAGCTAAATCTCTTTGGTTTCCATGCCTCATC---------- 199
                      ***************************************** ** ****           

consensus_6136#0      TTACTACCTAGTTGTAGAAAATTCAAACTCGCGACGACCTTGAGCCC 285
consensus_6136#1      -----------------------------------------------