These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6137#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 690 fasta sequence [ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCTTCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGATTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTTCGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTAACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATA-TGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTGCCGCGTCTATCACAATACC] [+] EMBL CD063616 [ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCTTCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGATTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTTCGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTAACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATA TGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAA ] [-] EMBL BG932552 [ ATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATA TGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCGTGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTGCCGCGTCTATCACAATACC] [-] EMBL CD115569 [ TAATGTTGAGTGTGTAGTGTCTGTCATAGGATAGTGCAAGCCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGCCCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATCGTAAACGTAAACCTGATGCCTCAGCAGCTCT ] consensusID : consensus_6137#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [ATCAACTTCGCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTTTGTAAAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAATACAT] [+] EMBL CD126787 [ATCAACTTCGCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGATAAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCAAACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTTGGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAGCTCCAGATATCTGATGCATCAGCAGCTCTGAAAAACGTTTTGACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGACGACGTTCTTCCAGTGTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAATGAACGTACCTTTGTAAAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAATACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6137#0 ATAATGGAATGTAATTCCTCATCAGAACGCATATTTGATGTGACATTAGCTTGTAAACCT 60 consensus_6137#1 ------------------------------------------------------------ consensus_6137#0 TCTCGTAACATAGTTTTCGCTACTTCAAAAGACGGTGCAGCAACAAATACAACACAAGGA 120 consensus_6137#1 ------------------------------------------------------------ consensus_6137#0 TTAAACTCTGGTTGATGTAACAAATGTAGTGATTGGGGCTGACAATCTAATACAGCAGTT 180 consensus_6137#1 ------------------------------------------------------------ consensus_6137#0 CGTCCATTAGCTATAATTTTACGTAATTCAGAAAAACGAATTCCATAGTAATGACCATTA 240 consensus_6137#1 --------------------------------------------------------ATCA 4 ** * consensus_6137#0 ACTTTACCCCATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGAT 300 consensus_6137#1 ACTTCGCCC-ATTCAACATAGGCACCAGATTTCACGTCAGACTCCATTTGATCTTTAGAT 63 **** *** ************************************************** consensus_6137#0 AAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCA 360 consensus_6137#1 AAAACTTTAAATAAATTAGTCGGTAATGTTGAGTCTGTAGTATCTGTCATAGGATATGCA 123 ************************************************************ consensus_6137#0 AACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTT 420 consensus_6137#1 AACCTTTTCGGTTCATATTTTGCAAGAAGTACTTTTAAATTCCGTCGACCAACACCATTT 183 ************************************************************ consensus_6137#0 GGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAG 480 consensus_6137#1 GGCCCAATAAGCAAAAGACAAGGCACTTTAGACTGTGGCCATGGTACAACTTCTTCATAG 243 ************************************************************ consensus_6137#0 CTCCAGATATCTGATCGTAAACGTAAACCTGATGCATCAGCAGCTCTGAAAAACGTTTTG 540 consensus_6137#1 CTCCAGATATCTGAT------------------GCATCAGCAGCTCTGAAAAACGTTTTG 285 *************** *************************** consensus_6137#0 ACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGA 600 consensus_6137#1 ACTTTTTTCCACGGTTTACGACTAGTATTTGCCTGAAGCTTTTCTTGATTGAAGGCTTGA 345 ************************************************************ consensus_6137#0 CGACGTTCTTCCAGTGTTTGTGAAGGTATTAAACGAGCTTTTGAGTTGGGCTCTTTCAAT 660 consensus_6137#1 CGACGTTCTTCCAGTGTTTGTGAAGGTATTAAGCGAGCTTTTGAGTTGGGCTCTTTCAAT 405 ******************************** *************************** consensus_6137#0 GAACGTACCTGCC------GCGTCTATCACAATACC------------------------ 690 consensus_6137#1 GAACGTACCTTTGTAAAAAAAATAAACCATAAGACAACGCATCAAACTTTATATCCCGAA 465 ********** * * ** ** ** consensus_6137#0 ----- consensus_6137#1 TACAT 470 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||