These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 517 fasta sequence [CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATTACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTCGACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGATTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTCGTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAAGCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGGACTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA] [+] EMBL CD098378 [CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATTACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTCGACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGATTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTCGTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAAGCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGGACTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA] [-] EMBL CD131943 [ AGTAGGTGGGGTGGTTGGATTCAGTCGGTTAAAAATATGGATCCTGGATCACTCTATGAAATCGGTCCACATAGCGCTCGTGCAAAATGTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAAGCTCACTTGTTTGGATGAGGCAGGGTACAGATGGATCGAAGCAATTAATGTATATAAATGACCATCTGTTGCCAATGTCTGCGTTAAATTTCCCCACTTTAAGACCAT ] [-] EMBL BG932512 [ AGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGG ] consensusID : consensus_6139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [GAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCTTCTGCGATAAACGATCAGAATTTATGGTGTAAGCCACGCGACATACTTGACCATCCTCTAAACGGAAGGCTATGTGTGAAGGACTAATTACACATTGTGCTATTGACTCCCGGGTTAATGGACGCAAAACAT] [-] EMBL CD063622 [GAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCTTCTGCGATAAACGATCAGAATTTATGGTGTAAGCCACGCGACATACTTGACCATCCTCTAAACGGAAGGCTATGTGTGAAGGACTAATTACACATTGTGCTATTGACTCCCGGGTTAATGGACGCAAAACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6139#0 CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATT 60 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 ACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTC 120 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 GACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGA 180 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 TTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTC 240 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 GTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAA 300 consensus_6139#1 ------------------------------------------------------------ consensus_6139#0 GCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATG 360 consensus_6139#1 ---------------------------------GAGCGAAGCAATTAATGTATATAAATG 27 *************************** consensus_6139#0 ACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCA 420 consensus_6139#1 ACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCA 87 ************************************************************ consensus_6139#0 CTTGTAGTTTAATCATCAGGCGGTTATTTTC-----TCGACGCCCACCGTCTCAGTCAGA 475 consensus_6139#1 CTTGTAGTTTAATCATCAGGCTTCTGCGATAAACGATCAGAATTTATGGTGTAAGCCACG 147 ********************* * * ** * ** * ** ** consensus_6139#0 CTGGACTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA------------------ 517 consensus_6139#1 CGACATACTTGACCATCCTCTAAACGGAAGGCTATGTGTGAAGGACTAATTACACATTGT 207 * * **** * ** * * * * * consensus_6139#0 ---------------------------------- consensus_6139#1 GCTATTGACTCCCGGGTTAATGGACGCAAAACAT 241 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||