cluster # 614

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Schistosoma mansoni
cluster # 614 cluster # 614 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_614#0 length = 327 sequences # 1

consensus_614#1 length = 313 sequences # 1

consensusID : consensus_614#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [CCAACTTGTATCGANTGTTCAGGGACAAAATTTAGCACGGTTAGAATGAACGGACTTACCCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTGCCTCCTTAGCAACTTCCAAAAGCACTGAATCCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCTACACATTAAAGAAAGACTGGAGGAAGGGAGAGAGGGAGGGTCATGTGGAGCTGTAGCAGTTAAGAACACTTGCTGCGGGAGGCAGAGGCAGGCGGATCTCTGTGAGTTCGAGGCCAGGCTGGACTAACAGCCTCCAAAACAATACAGAGA]

[+] EMBL AW061626             [CCAACTTGTATCGANTGTTCAGGGACAAAATTTAGCACGGTTAGAATGAACGGACTTACCCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTGCCTCCTTAGCAACTTCCAAAAGCACTGAATCCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCTACACATTAAAGAAAGACTGGAGGAAGGGAGAGAGGGAGGGTCATGTGGAGCTGTAGCAGTTAAGAACACTTGCTGCGGGAGGCAGAGGCAGGCGGATCTCTGTGAGTTCGAGGCCAGGCTGGACTAACAGCCTCCAAAACAATACAGAGA]




>consensus_614#0
CCAACTTGTATCGANTGTTCAGGGACAAAATTTAGCACGGTTAGAATGAACGGACTTACC
CTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTGCCTCCTTAGCAACTTCCAAAAGC
ACTGAATCCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCTACA
CATTAAAGAAAGACTGGAGGAAGGGAGAGAGGGAGGGTCATGTGGAGCTGTAGCAGTTAA
GAACACTTGCTGCGGGAGGCAGAGGCAGGCGGATCTCTGTGAGTTCGAGGCCAGGCTGGA
CTAACAGCCTCCAAAACAATACAGAGA

consensusID : consensus_614#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [CCAACTTGGATCATGTGTTCAGGGACAAAATTTAAGCACGGTTAGAATGAACGGACTTACCCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTCCTTCCTTAGCAACTTCCAAAAGCACTGAATTCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCGACACATTATAGAAAGAGGGAGGAAGGGAGATAGGGTAGGGTCATGTTGGAGCTGTTAGCAGTTAAGAACACTTGCTGCGGGAGGCAGAAGGCAGGCGGGATCTCTGTGAGTTCGATGTCCAGCGCGGTACTCAAG]

[+] EMBL AI820474             [CCAACTTGGATCATGTGTTCAGGGACAAAATTTAAGCACGGTTAGAATGAACGGACTTACCCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTCCTTCCTTAGCAACTTCCAAAAGCACTGAATTCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCGACACATTATAGAAAGAGGGAGGAAGGGAGATAGGGTAGGGTCATGTTGGAGCTGTTAGCAGTTAAGAACACTTGCTGCGGGAGGCAGAAGGCAGGCGGGATCTCTGTGAGTTCGATGTCCAGCGCGGTACTCAAG]




>consensus_614#1
CCAACTTGGATCATGTGTTCAGGGACAAAATTTAAGCACGGTTAGAATGAACGGACTTAC
CCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTCCTTCCTTAGCAACTTCCAAAAG
CACTGAATTCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCGAC
ACATTATAGAAAGAGGGAGGAAGGGAGATAGGGTAGGGTCATGTTGGAGCTGTTAGCAGT
TAAGAACACTTGCTGCGGGAGGCAGAAGGCAGGCGGGATCTCTGTGAGTTCGATGTCCAG
CGCGGTACTCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_614#0      CCAACTTGTATCGANTGTTCAGGGACAAAATTTA-GCACGGTTAGAATGAACGGACTTAC 59
consensus_614#1      CCAACTTGGATCATGTGTTCAGGGACAAAATTTAAGCACGGTTAGAATGAACGGACTTAC 60
                     ******** ***   ******************* *************************

consensus_614#0      CCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTGCCTCCTTAGCAACTTCCAAAAG 119
consensus_614#1      CCTCAGTAAACTTACACCCGGGTTTAAGGCACCTGGTCCTTCCTTAGCAACTTCCAAAAG 120
                     ************************************* * ********************

consensus_614#0      CACTGAATCCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCTAC 179
consensus_614#1      CACTGAATTCAAACACTGGTTCCAACCATAAAGAGCCTTATTAGAGGGACTGACAGCGAC 180
                     ******** ************************************************ **

consensus_614#0      ACATTAAAGAAAGACTGGAGGAAGGGAGAGAGGG-AGGGTCATGT-GGAGCTGT-AGCAG 236
consensus_614#1      ACATTATAGAAAGAG-GGAGGAAGGGAGATAGGGTAGGGTCATGTTGGAGCTGTTAGCAG 239
                     ****** *******  ************* **** ********** ******** *****

consensus_614#0      TTAAGAACACTTGCTGCGGGAGGCAGA-GGCAGGCGG-ATCTCTGTGAGTTCGAGGCCAG 294
consensus_614#1      TTAAGAACACTTGCTGCGGGAGGCAGAAGGCAGGCGGGATCTCTGTGAGTTCGATGTCCA 299
                     *************************** ********* **************** * *  

consensus_614#0      GCTGGACTAACAGCCTCCAAAACAATACAGAGA 327
consensus_614#1      GCGCGGTACTCAAG------------------- 313
                     **  *     **