These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 628 fasta sequence [CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTATATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTCCAATAGAAAATTGCCTAACATTCAAAAGTTGACCATTATCATCATCGTCGTCAGTTTCATTTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTTTGGAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAACCTTGAACCGGAATTTGATCCTAAATTCAT] [-] EMBL CD178600 [CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTATATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTCCAATAGAAAATTGCCTAACATT ] [+] EMBL CD160027 [ TTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATGGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTATATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTCCAATAGAAAATTGGCTAACATTCAAAAGTTGACCATT ] [-] EMBL CD196300 [ tgGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTNGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTNTAATACAGAATATATTCCAATAGAAAATTGCCTAACATTCAAAAGTTGACAATTATCATCATCGTCGTCAGTTTCATTTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTTTGGAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAACCTTGAACCGGAATTTGATCCTAAATTCAT] consensusID : consensus_6143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence [TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTAAAATCAAATGGAAATTATGTATTTCAAAATAAATAACTACATACGAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATTCTTCATAGGAAAAATATGATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAATCGTAAACAAAGGTGGATGATGGATAGCAGTGGAATCCAAGACGCGTGTTCGTCCTATTTGGGACTGAT] [+] EMBL CD179003 [TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTAAAATCAAATGGAAATTATGTATTTCAAAATAAATAACTACATACGAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATTCTTCATAGGAAAAATATGATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAATCGTAAACAAAGGTGGATGATGGATAGCAGTGGAATCCAAGACGCGTGTTCGTCCTATTTGGGACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6143#0 -CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTA 59 consensus_6143#1 TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTA 60 **************************** ****************************** consensus_6143#0 TGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATG 119 consensus_6143#1 TGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATG 120 ************************************************************ consensus_6143#0 TTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATA 179 consensus_6143#1 TTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATA 180 ************************************************************ consensus_6143#0 CGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTA 239 consensus_6143#1 CGAAAAACTCTATCCTA--AAATCAAATGGAAATTATGTATTTC--AAAATAAATAACTA 236 **************** **** ********* ** * * * * ** consensus_6143#0 TATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCT 299 consensus_6143#1 CATAC--GAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATT----CTTCATAG 290 ** * * * ** ** * ** * ** *** * * *** * consensus_6143#0 AATCGACCTAATGCTTGATCTAACGCAATCAGT-TGATCTTGTAGTTGTTTTTGAGATGA 358 consensus_6143#1 GAAAAATATGATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAA 350 * * * ** * *** * * * *** * * * ** ** * consensus_6143#0 CTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATAT 418 consensus_6143#1 TCGTAAAC-----AAAGGTGGATGATGGATAGCAGTGGAATCC---AAGACGCGTGTTCG 402 **** ** * * * *** ** ** ** **** ** ** * consensus_6143#0 TCCAATAGAAAATTGCCTAACATTCAAAAGTTGACCATTATCATCATCGTCGTCAGTTTC 478 consensus_6143#1 TCCTATTTGGGACTGAT------------------------------------------- 419 *** ** * ** consensus_6143#0 ATTTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTT 538 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 TGGAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAA 598 consensus_6143#1 ------------------------------------------------------------ consensus_6143#0 CCTTGAACCGGAATTTGATCCTAAATTCAT 628 consensus_6143#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||