cluster # 6143

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Schistosoma mansoni
cluster # 6143 cluster # 6143 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6143#0 length = 628 sequences # 3

consensus_6143#1 length = 419 sequences # 1

consensusID : consensus_6143#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 628
fasta sequence

                              [CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTATATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTCCAATAGAAAATTGCCTAACATTCAAAAGTTGACCATTATCATCATCGTCGTCAGTTTCATTTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTTTGGAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAACCTTGAACCGGAATTTGATCCTAAATTCAT]

[-] EMBL CD178600             [CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTATATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTCCAATAGAAAATTGCCTAACATT                                                                                                                                                                                          ]
[+] EMBL CD160027             [  TTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATGGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTATATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTCCAATAGAAAATTGGCTAACATTCAAAAGTTGACCATT                                                                                                                                                                           ]
[-] EMBL CD196300             [                                                                                                                                                                                                                                                       tgGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTAATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTNGTAGTTGTTTTTGAGATGACTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTNTAATACAGAATATATTCCAATAGAAAATTGCCTAACATTCAAAAGTTGACAATTATCATCATCGTCGTCAGTTTCATTTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTTTGGAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAACCTTGAACCGGAATTTGATCCTAAATTCAT]




>consensus_6143#0
CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTAT
GCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGT
TGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATAC
GAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTAT
ATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCTA
ATCGACCTAATGCTTGATCTAACGCAATCAGTTGATCTTGTAGTTGTTTTTGAGATGACT
GTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATATTC
CAATAGAAAATTGCCTAACATTCAAAAGTTGACCATTATCATCATCGTCGTCAGTTTCAT
TTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTTTG
GAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAACC
TTGAACCGGAATTTGATCCTAAATTCAT

consensusID : consensus_6143#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTAAAATCAAATGGAAATTATGTATTTCAAAATAAATAACTACATACGAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATTCTTCATAGGAAAAATATGATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAATCGTAAACAAAGGTGGATGATGGATAGCAGTGGAATCCAAGACGCGTGTTCGTCCTATTTGGGACTGAT]

[+] EMBL CD179003             [TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTATGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATGTTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATACGAAAAACTCTATCCTAAAATCAAATGGAAATTATGTATTTCAAAATAAATAACTACATACGAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATTCTTCATAGGAAAAATATGATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAATCGTAAACAAAGGTGGATGATGGATAGCAGTGGAATCCAAGACGCGTGTTCGTCCTATTTGGGACTGAT]




>consensus_6143#1
TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTA
TGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATG
TTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATA
CGAAAAACTCTATCCTAAAATCAAATGGAAATTATGTATTTCAAAATAAATAACTACATA
CGAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATTCTTCATAGGAAAAATATG
ATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAATCGTAAACAA
AGGTGGATGATGGATAGCAGTGGAATCCAAGACGCGTGTTCGTCCTATTTGGGACTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6143#0      -CATTATCAGTATTATTGTTAGTACGTCGGGCAGCTCTCTGTTTATCTAAAAGATCTTTA 59
consensus_6143#1      TCATTATCAGTATTATTGTTAGTACGTCGAGCAGCTCTCTGTTTATCTAAAAGATCTTTA 60
                       **************************** ******************************

consensus_6143#0      TGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATG 119
consensus_6143#1      TGCTTTTCAAAATTGATACCAGATAGATCTAGACCTCTCAAGTACTGAACAACAGCCATG 120
                      ************************************************************

consensus_6143#0      TTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATA 179
consensus_6143#1      TTGAGAACAGGAAATTATTTTAAGGAAGTGATTTTCTTCGCCTGAATATTTTGATGAATA 180
                      ************************************************************

consensus_6143#0      CGAAAAACTCTATCCTGTGAAATACGTAAAGAATTATGTACTTTCGATATTCGTTGTTTA 239
consensus_6143#1      CGAAAAACTCTATCCTA--AAATCAAATGGAAATTATGTATTTC--AAAATAAATAACTA 236
                      ****************   ****        ********* **   * * *   *   **

consensus_6143#0      TATTCTTGTAGTACCAATACAAAGGGTTCTAGATTCAGAGGACTATCTTGAGCTTTAGCT 299
consensus_6143#1      CATAC--GAATTAAAAAGTAATTATATTATTAATGAAGACAAACGATT----CTTCATAG 290
                       ** *  * * **  **   *     ** *  **  ***  *     *    *** *   

consensus_6143#0      AATCGACCTAATGCTTGATCTAACGCAATCAGT-TGATCTTGTAGTTGTTTTTGAGATGA 358
consensus_6143#1      GAAAAATATGATTATCGATAAACTATGTAAAATGTGAGTACACAATAGATTGAAAGTGAA 350
                       *   *  * **  * ***  *        * * ***      * * * **   **   *

consensus_6143#0      CTGTAAGTCACGAAATGCTAGTTGAAATTTATCAACGGTATCCTTTAATACAGAATATAT 418
consensus_6143#1      TCGTAAAC-----AAAGGTGGATGATGGATAGCAGTGGAATCC---AAGACGCGTGTTCG 402
                        ****       ** * * * ***    ** **  ** ****   ** **      *  

consensus_6143#0      TCCAATAGAAAATTGCCTAACATTCAAAAGTTGACCATTATCATCATCGTCGTCAGTTTC 478
consensus_6143#1      TCCTATTTGGGACTGAT------------------------------------------- 419
                      *** **     * **                                             

consensus_6143#0      ATTTTTTATTTGTTCATTACTGCTGATATCGATATTACTATCCTGTTCATTATTCTCTTT 538
consensus_6143#1      ------------------------------------------------------------
                                                                                  

consensus_6143#0      TGGAGTATCAGAACTAAACGAAGCAGTAGTAAATGAATGAGACCAATCAAATTCAGGAAA 598
consensus_6143#1      ------------------------------------------------------------
                                                                                  

consensus_6143#0      CCTTGAACCGGAATTTGATCCTAAATTCAT 628
consensus_6143#1      ------------------------------