cluster # 6148

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Schistosoma mansoni
cluster # 6148 cluster # 6148 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6148#0 length = 623 sequences # 2

consensus_6148#1 length = 526 sequences # 1
consensus_6148#2 length = 254 sequences # 1

consensusID : consensus_6148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 623
fasta sequence

                              [AAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGAGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTCACCGAGTTATGTGGCGTTCACAGACTCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGA]

[+] EMBL CD085734             [AAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGAGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTCACCGAGTTATGTGGCGTTCACAGACTCTGAGCGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGA]
[+] EMBL CD085660             [AAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTCACCGAGTTATGTGGCGTTCACAGACTCTGAGCGTTTAATTGGTGGTGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTC                                                                    ]




>consensus_6148#0
AAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGAGAGAAAAAGATGTTTTCCG
CTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGG
GCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTC
AAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGAGC
CGACAGCTGCGGCAATTGCCTATGGTTTGGACAAGAAGGTTGGTGGTGAGCGTAATGTGT
TGATATTTGATTTGGGTGGTGGTCACCGAGTTATGTGGCGTTCACAGACTCTGAGCGTTT
AATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGATGC
GAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCATTG
GCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGA
GAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGT
TGCTGAAAGTTATTTGGGCAGGA

consensusID : consensus_6148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [TTCTCAGCGTCAAGATCACTTTATAGAAAAATTACGTGCTTTTNGCCACTGAAAAAGGTACACATGTTACGATCGTCGCTCATCCTCGAAAGGAAGAAATTGGTCGTCTGCTTTCAATTAACAGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGACCCGACAGCTGCGGCAATTGCCTA]

[+] EMBL CD190608             [TTCTCAGCGTCAAGATCACTTTATAGAAAAATTACGTGCTTTTNGCCACTGAAAAAGGTACACATGTTACGATCGTCGCTCATCCTCGAAAGGAAGAAATTGGTCGTCTGCTTTCAATTAACAGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGACCCGACAGCTGCGGCAATTGCCTA]




>consensus_6148#1
TTCTCAGCGTCAAGATCACTTTATAGAAAAATTACGTGCTTTTNGCCACTGAAAAAGGTA
CACATGTTACGATCGTCGCTCATCCTCGAAAGGAAGAAATTGGTCGTCTGCTTTCAATTA
ACAGTTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGT
TTGATGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGA
AGCATTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATA
AGGGTGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGA
AGGAGGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTG
CTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTA
ATGTGTTGAGAATCATTAACGACCCGACAGCTGCGGCAATTGCCTA

consensusID : consensus_6148#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [AGCGAGGAGATTTCGTCATCTGGTGTTGACGAAGATGAAGGATGTTGCTGAAATTTATCTGGGCAGGACGGGGAATCTACATTGTTATAAAGGTTCCGGGTTATTTTTTTTGCTAGGNAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAATAAGGTTGGTGGTGAGCGTAACGTGTTGATATTTGA]

[+] EMBL CD181000             [AGCGAGGAGATTTCGTCATCTGGTGTTGACGAAGATGAAGGATGTTGCTGAAATTTATCTGGGCAGGACGGGGAATCTACATTGTTATAAAGGTTCCGGGTTATTTTTTTTGCTAGGNAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACGAGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAATAAGGTTGGTGGTGAGCGTAACGTGTTGATATTTGA]




>consensus_6148#2
AGCGAGGAGATTTCGTCATCTGGTGTTGACGAAGATGAAGGATGTTGCTGAAATTTATCT
GGGCAGGACGGGGAATCTACATTGTTATAAAGGTTCCGGGTTATTTTTTTTGCTAGGNAA
CGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAAC
GAGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAATAAGGTTGGTGGTGAGCGTAAC
GTGTTGATATTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6148#0      AAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGGAGAGAAAAAGATGTTTTCCG 60
consensus_6148#2      -----------------------------------------------------------A 1
consensus_6148#1      ------------------------------------------------------------
                                                                                  

consensus_6148#0      CTGAGGAGATTTCGTCAA-TGGTGTTGACGAAGATGAAGGAGGTTGCTGAAAGTTATTTG 119
consensus_6148#2      GCGAGGAGATTTCGTCATCTGGTGTTGACGAAGATGAAGGATGTTGCTGAAATTTATCTG 61
consensus_6148#1      ------------------------------------------------------------
                                                                                  

consensus_6148#0      GGCAGGACGGTGAGTG-ACGCTGTTATAACGGTTCCTGCTTACTTCAATGAC-AGTCAAC 177
consensus_6148#2      GGCAGGACGGGGAATCTACATTGTTATAAAGGTTCCGGGTTATTTTTTTTGCTAGGNAAC 121
consensus_6148#1      ------------------------------------------------------------
                                                                                  

consensus_6148#0      GTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACG 237
consensus_6148#2      GTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGTGTTGAGAATCATTAACG 181
consensus_6148#1      ------------------------------------------TTCTCAGCGTCAA-GATC 17
                                                                *  * **  ***   *  

consensus_6148#0      AGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAAGAAGGTTGGTGGTGAGCGTAATG 297
consensus_6148#2      AGCCGACAGCTGCGGCAATTGCCTATGGTTTGGACAATAAGGTTGGTGGTGAGCGTAACG 241
consensus_6148#1      ACTTTATAG----AAAAATTACGTGCT-TTTNGCCACTGAAAAAGGTA-CACATGTTACG 71
                      *    * **       **** * *    *** * **   *    ***       ** * *

consensus_6148#0      TGTTGATATTTGATTTGGGTGGTGGTCACCGAGTTATGTGGCGTTCACAGACTCTGAGCG 357
consensus_6148#2      TGTTGATATTTGA----------------------------------------------- 254
consensus_6148#1      -ATCGTCGCTCATCCTCGAAAGGAAGAAATTGGTCGTCTG-CTTTCA-----ATTAACAG 124
                        * *    *                                                  

consensus_6148#0      TTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGA 417
consensus_6148#2      ------------------------------------------------------------
consensus_6148#1      TTTAATTGGTGATGGAGCGAAGAACCAAGTGGCGATGAACCCAACAAATACAGTGTTTGA 184
                                                                                  

consensus_6148#0      TGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCA 477
consensus_6148#2      ------------------------------------------------------------
consensus_6148#1      TGCGAAGCGTCTAATCGGTCGTCGGTTCGATGATCCATCAGTGCAGAGTGATATGAAGCA 244
                                                                                  

consensus_6148#0      TTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGG 537
consensus_6148#2      ------------------------------------------------------------
consensus_6148#1      TTGGCCATTCGAGGTGACTCAAGTCGGTGGGAAGCTGAAGATTTGTGTTGAGTATAAGGG 304
                                                                                  

consensus_6148#0      TGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGA 597
consensus_6148#2      ------------------------------------------------------------
consensus_6148#1      TGAGAAAAAGATGTTTTCCGCTGAGGAGATTTCGTCAATGGTGTTGACGAAGATGAAGGA 364
                                                                                  

consensus_6148#0      GGTTGCTGAAAGTTATTTGGGCAGGA---------------------------------- 623
consensus_6148#2      ------------------------------------------------------------
consensus_6148#1      GGTTGCTGAAAGTTATTTGGGCAGGACGGTGAGTGACGCTGTTATAACGGTTCCTGCTTA 424
                                                                                  

consensus_6148#0      ------------------------------------------------------------
consensus_6148#2      ------------------------------------------------------------
consensus_6148#1      CTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTGGTCTTAATGT 484
                                                                                  

consensus_6148#0      ------------------------------------------
consensus_6148#2      ------------------------------------------
consensus_6148#1      GTTGAGAATCATTAACGACCCGACAGCTGCGGCAATTGCCTA 526