cluster # 6154

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Schistosoma mansoni
cluster # 6154 cluster # 6154 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6154#0 length = 536 sequences # 1

consensus_6154#1 length = 445 sequences # 2
consensus_6154#2 length = 365 sequences # 1

consensusID : consensus_6154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCTGAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGTTCTCACAGCTTGTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTCGGTGCAGACTTCAGTTGTACTACTATACCAGGAGGCTATACTGCTGCCTCTTGTGGCTTCTACTGAGTGTGTCAGGACGTCTTATTGCAGAACTATAGTCTTGATCCAGTGAATAACAGTCTGAGTTCTTCACAAAAATCATCCACTGAGAGACATGTCACTGATTCGTCAAATTACATGCCTTCTTCGCCAGATGCAGAGAAAACCCAAAGTACGGCTGCTTGTAGTCAACAAGTTATTCCATTTTCAGTTTGTTCTGGGTCACATTCACTGGACAATTCGAACATGTTTCATGACCCCAAATACTCTCAGAAACCTACTTCTAACAATCCTTCGTCTGCTAAT]

[+] EMBL CD167554             [AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCTGAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGTTCTCACAGCTTGTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTCGGTGCAGACTTCAGTTGTACTACTATACCAGGAGGCTATACTGCTGCCTCTTGTGGCTTCTACTGAGTGTGTCAGGACGTCTTATTGCAGAACTATAGTCTTGATCCAGTGAATAACAGTCTGAGTTCTTCACAAAAATCATCCACTGAGAGACATGTCACTGATTCGTCAAATTACATGCCTTCTTCGCCAGATGCAGAGAAAACCCAAAGTACGGCTGCTTGTAGTCAACAAGTTATTCCATTTTCAGTTTGTTCTGGGTCACATTCACTGGACAATTCGAACATGTTTCATGACCCCAAATACTCTCAGAAACCTACTTCTAACAATCCTTCGTCTGCTAAT]




>consensus_6154#0
AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCT
GAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGT
TCTCACAGCTTGTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAG
TTCAAGGATTCGGTGCAGACTTCAGTTGTACTACTATACCAGGAGGCTATACTGCTGCCT
CTTGTGGCTTCTACTGAGTGTGTCAGGACGTCTTATTGCAGAACTATAGTCTTGATCCAG
TGAATAACAGTCTGAGTTCTTCACAAAAATCATCCACTGAGAGACATGTCACTGATTCGT
CAAATTACATGCCTTCTTCGCCAGATGCAGAGAAAACCCAAAGTACGGCTGCTTGTAGTC
AACAAGTTATTCCATTTTCAGTTTGTTCTGGGTCACATTCACTGGACAATTCGAACATGT
TTCATGACCCCAAATACTCTCAGAAACCTACTTCTAACAATCCTTCGTCTGCTAAT

consensusID : consensus_6154#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence

                              [GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTGTCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCAACAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAATGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAATCCTCAGCATTTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACATCAACGTGTCCGAATGAGCATGCATTATGCAACGGAA]

[+] EMBL CD160154             [GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTGTCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCAACAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAATGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAATCCTCAGCATTTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACATCAACGTGTCCGAATGAGCATGCATTATGCAACGGAA]
[+] EMBL CD160186             [GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTGTCTACCCAAGACTGGTGGAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCAACAGGGGTTTTCCCATCTAAATTTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAATGCAAACTTCCACTTTTCCTTTTATAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAATCCTCAGCATCTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACA                                     ]




>consensus_6154#1
GGAGTTTGACCCTCAACATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCA
ATCAACTGTCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACA
TTTTGTGGAGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGT
AGTTCATCTTTCCTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAATCA
ACAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAA
ATGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAA
TCCTCAGCATTTGGGTCAGAACCTGCTGATAGTAACAGGTGCACCACATCAACGTGTCCG
AATGAGCATGCATTATGCAACGGAA

consensusID : consensus_6154#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [CAGGTTCTTATCCTGGATTTCATTCACCAGAAAACAAACAACTTATATCTCACACACAGTACACCAAGGACTTGTTAGTCAAACCAGTCAGTCGTAATGTTTCACCAGTCTTGGGTAGACAGTTGATTGAATGGCTTATCGATCAAGGTATTTCGGTCTCAGATTGCAATGTTGAGGGTCAAACTCCTCTCCACTTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTGTTTGCTACGACGCGGTGCCGAACCAAACGTTGCGGACTGGCATGGTTTCACACCTTTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTTGGTGCAGACTTAAGTTGT]

[-] EMBL CD190009             [CAGGTTCTTATCCTGGATTTCATTCACCAGAAAACAAACAACTTATATCTCACACACAGTACACCAAGGACTTGTTAGTCAAACCAGTCAGTCGTAATGTTTCACCAGTCTTGGGTAGACAGTTGATTGAATGGCTTATCGATCAAGGTATTTCGGTCTCAGATTGCAATGTTGAGGGTCAAACTCCTCTCCACTTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTGTTTGCTACGACGCGGTGCCGAACCAAACGTTGCGGACTGGCATGGTTTCACACCTTTACACCTGGCTGCTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTTGGTGCAGACTTAAGTTGT]




>consensus_6154#2
CAGGTTCTTATCCTGGATTTCATTCACCAGAAAACAAACAACTTATATCTCACACACAGT
ACACCAAGGACTTGTTAGTCAAACCAGTCAGTCGTAATGTTTCACCAGTCTTGGGTAGAC
AGTTGATTGAATGGCTTATCGATCAAGGTATTTCGGTCTCAGATTGCAATGTTGAGGGTC
AAACTCCTCTCCACTTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTGTTTGCTAC
GACGCGGTGCCGAACCAAACGTTGCGGACTGGCATGGTTTCACACCTTTACACCTGGCTG
CTAAATATGGACATTCTCATATTATACAGCTCTTAGTTCAAGGATTTGGTGCAGACTTAA
GTTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6154#0      AGCATGCAGATGTGAGGGTCGAATCTCCTCTCCACTTAGCCGCTCGTTTACGGATAATCT 60
consensus_6154#2      ------------------------------------------------------------
consensus_6154#1      ------------------------------------------------------------
                                                                                  

consensus_6154#0      GAAGCTAGTGCTTGTGCGCTACGACGCGGTGCCGAACCAAACGTTGGGGACGGGCATGGT 120
consensus_6154#2      ------------------------------------------------------CA-GGT 5
consensus_6154#1      --------------------------------------------------GGAGTTTGAC 10
                                                                               *  

consensus_6154#0      TCTCACAGCTTGTACACCTGGCTGCTAAATAT---GGACATTCTCATATTATACAGCTCT 177
consensus_6154#2      TCTTAT--CCTGGATTTCATTCACCAGAAAAC---AAACAA-CTTATATCTCACACACAG 59
consensus_6154#1      CCTCAA--CATTGCAATCTGAGACCGAAATACCTTGATCGATAAGCCATTCAATCAACTG 68
                       ** *   * *      *      *  ** *       *        **   *       

consensus_6154#0      TAGTTCAAGGATTCGGTG--CA----GACT---TCAGTTGTACTACTATACCAGGA--GG 226
consensus_6154#2      TACACCAAGGACTTGTTAGTCA----AACCAG-TCAGTCGTAATGTTTCACCAGTCTTGG 114
consensus_6154#1      TCTACCCAAGACTGGTGAAACATTACGACCATCTCCAGCATGACAGTTTACATTTTGTGG 128
                      *    * * ** * *     **     **    **     *     *  **       **

consensus_6154#0      -CTATACTGCT------GCCTCTTGTGGCTTCTA--CTGAGTGTGTCAGGACGTCTTATT 277
consensus_6154#2      -GTAGACAGTT------GATTGA-ATGGCT--TA--TCGA-----TCAAGGTATTTCGGT 157
consensus_6154#1      AGTCAACAGACTTATGAGCTTTTCTTCATTCCCACTTCGAGCAGCTTCGAGTAGTTCATC 188
                        *  ** *        *  *    *   *   *    **     *         *    

consensus_6154#0      GCAGAACTATAGTCTTGATCCAGTGAATAACAGTCTGAGTTCTTCACAAAAATCATCCAC 337
consensus_6154#2      CTCAGATTGCAATGTTGA-------------GGGTCAAACTCCTC----------TCCAC 194
consensus_6154#1      TTTC--CTATACTCTCCAAGTAAAGCTAAACGGGCCGAACCCTCAGCCAAA-----TCAA 241
                             *  * * *  *              *    *   *               ** 

consensus_6154#0      TGAGAGACATGTCACTGATTCGTCAAATTACATGCCTT--CTTCGCCAGATGCAGAGAAA 395
consensus_6154#2      TTAGCCGCTCGTTACGGATATCTTGAAGCAACTGCTTG--TTTGCTACGACGCGGTGCCG 252
consensus_6154#1      CAGGGGTTTTCCCATCTAAATNTCGAGCGTGAGGATTGGCTTTTGCCTGAAGCAACAAAA 301
                         *         *   *    *  *       *  *    **     ** **       

consensus_6154#0      ACCCAAAGTACGGCTGCTTGTAGTCAACAAGTTATTCCATTTTCAGTTTGTTCTGGG--T 453
consensus_6154#2      AACCAAA-------CGTTGCGGACTGGCATGGTTTCACACCTTTACAC----CTGGC--T 299
consensus_6154#1      TGCAAACTTCCACTTTTCCTTTTGTAGCAGCTTCATGTAGAGGTGTGTAGTTCCAGCAAT 361
                        * **                     **   *     *             *  *   *

consensus_6154#0      CACATTCACTGGACAATTCGAACATGTTTCATGACCCCAAATACTCTCAGAAACCTACTT 513
consensus_6154#2      GCTAAATA-TGGACATTCT---CATATTATACAGCTCTTAGT----TCAAGGATTTGGTG 351
consensus_6154#1      CCTCAGCATTTGG--GTCAGAACCTGCTG-ATAGTAACAGGTGCACCACATCAACGTGTC 418
                             * * *    *     * *  *  *          *          *     * 

consensus_6154#0      CTAACAATCCTTCGTCTGCTAAT---- 536
consensus_6154#2      CAGACT-TAAGTTGT------------ 365
consensus_6154#1      CGAATGAGCATGCATTATGCAACGGAA 445
                      *  *          *