cluster # 6158

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Schistosoma mansoni
cluster # 6158 cluster # 6158 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6158#0 length = 616 sequences # 1

consensus_6158#1 length = 570 sequences # 1
consensus_6158#2 length = 435 sequences # 2

consensusID : consensus_6158#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGAAAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGACGAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAAATTATCATCCCAATCAATGATACTACAGAGTTAATGAAATTAAAAATAAGAAAAAAACATTGGAATTTCTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAAATATATAATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTATATAAAGACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAATCTTTATTTATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGACTCAGTGGCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGAGTCCCAGAGTGAAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCCACTGCTAGCCACTANTCATCTTTG]

[+] EMBL CD202013             [ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGAAAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGACGAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAAATTATCATCCCAATCAATGATACTACAGAGTTAATGAAATTAAAAATAAGAAAAAAACATTGGAATTTCTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAAATATATAATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTATATAAAGACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAATCTTTATTTATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGACTCAGTGGCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGAGTCCCAGAGTGAAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCCACTGCTAGCCACTANTCATCTTTG]




>consensus_6158#0
ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGA
AAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGAC
GAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAAATTATCAT
CCCAATCAATGATACTACAGAGTTAATGAAATTAAAAATAAGAAAAAAACATTGGAATTT
CTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAAATATAT
AATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTATATAAAG
ACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAATCTTTATT
TATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGACTCAGTG
GCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGAGTCCCAGAGTG
AAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCCACTGCTAG
CCACTANTCATCTTTG

consensusID : consensus_6158#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence

                              [AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATATTTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCACCACTGCAACCACCCTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTAAAGATGCACGAGACCTACTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCACGACAAAGAAAAATGACATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAAGATACATTTCGACCTGCAAGAAAAGTTTCCTTTCCACAATATGGTCT]

[+] EMBL AI976627             [AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATATTTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCACCACTGCAACCACCCTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTAAAGATGCACGAGACCTACTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCACGACAAAGAAAAATGACATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAAGATACATTTCGACCTGCAAGAAAAGTTTCCTTTCCACAATATGGTCT]




>consensus_6158#1
AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTG
TGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCA
ACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCC
TTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATA
TTTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCC
ATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCACCACTGCAACCACC
CTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTAAAGATGCACGAGACCTA
CTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCACGACAAAGAAAAATGAC
ATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAAGATACATTTCGACCTGC
AAGAAAAGTTTCCTTTCCACAATATGGTCT

consensusID : consensus_6158#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 435
fasta sequence

                              [GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTTCTTTTTAGAACGAATAGGTTTTATTCATCTCGAATTCAAACACCACTATTTTACAGTGAGTTGAATTGACAGGTGTGTACAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCATGGAAGGCCTCATCGAATCCACCTCCACAATTGCCACCACTGCAACCACCACCCAGTACGGTAATGCAG]

[+] EMBL AI975068             [GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTTCTTTTTAGAACGAATAGGTTTTATTCATCTCGAATTCAAACACCACTATTTTACAGTGAGTTGAATTGACAGGTG                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI974944             [                                                        AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGACAGGTGTGTACAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCATGGAAGGCCTCATCGAATCCACCTCCACAATTGCCACCACTGCAACCACCACCCAGTACGGTAATGCAG]




>consensus_6158#2
GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTTCTTTTTAGAACGAATAGGT
TTTATTCATCTCGAATTCAAACACCACTATTTTACAGTGAGTTGAATTGACAGGTGTGTA
CAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTG
GTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTG
CCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTG
TTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAG
GGGGCATGGAAGGCCTCATCGAATCCACCTCCACAATTGCCACCACTGCAACCACCACCC
AGTACGGTAATGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6158#1      ------------------------------------------------------------
consensus_6158#2      ---GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTT-CTTTTTAGAACGAAT 56
consensus_6158#0      ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGA 60
                                                                                  

consensus_6158#1      AGGTTTTATTCATCTCGAATTCAAACAC-GACTATATTACAGTGAGTTGAATT----GAG 55
consensus_6158#2      AGGTTTTATTCATCTCGAATTCAAACAC-CACTATTTTACAGTGAGTTGAATT----GAC 111
consensus_6158#0      AAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGAC 120
                      * *  **   **   *  * *   *     * *   *   ** *   *    *    ** 

consensus_6158#1      AGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGAC-ACAAACAAATTAGAATGATCCAC 114
consensus_6158#2      AGGTGTGTACAAAAATAGGACAGTGGAGAGTGTGAC-ACAAACAAATTAGAATGATCCAC 170
consensus_6158#0      GAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAA--ATTATC 178
                          *   * *    ** *  ***    * * **   * *** ***  * **  **   *

consensus_6158#1      AACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTT 174
consensus_6158#2      AACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTT 230
consensus_6158#0      ATCCCAATCAATGATAC---TACAGAGTTAATGA-AATTAAAAATAAGAAAAAAACATTG 234
                      * * ***    **   *    ** *  *  ** *    *     *   *     ** ** 

consensus_6158#1      GC-CGCCTTTGCCACCTTTGCCAC-CACCCTTACCCT-TACCGCTACCACCGCCATAACC 231
consensus_6158#2      GC-CGCCTTTGCCACCTTTGCCAC-CACCCTTACCCT-TACCGCTACCACCGCCATAACC 287
consensus_6158#0      GAATTTCTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAA 294
                      *     *****       ** *** **   * *   * * **  *   **  * * *   

consensus_6158#1      CTTTCCATATTTGTTGCCTTTACTACCACCTT----TTCCAAAGCCGTTGCCACCGTTAC 287
consensus_6158#2      CTTTCCATAATTGTTGCCTTTACTACCACCTT----TTCCAAAGCCGTTGCCACCGTTAC 343
consensus_6158#0      ATATATAATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTAT 354
                       * *  *       **  ***  *   *        ** **       *  *  * *** 

consensus_6158#1      CATAATCAC-CGCCATAGGGGGCAGGGAAGGCCTCA--TCGAAGCCACCTCCACAATTGC 344
consensus_6158#2      CATAATCAC-CGCCATAGGGGGCATGGAAGGCCTCA--TCGAATCCACCTCCACAATTGC 400
consensus_6158#0      -ATAAAGACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAAT 413
                       ****  **  *  *    *   * ****    * *  ** *  *  ***  *  **   

consensus_6158#1      CACCACT-GCAACCACCCTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTA 403
consensus_6158#2      CACCACT-GCAACCACCACCCAGTACGGTAATGCAG------------------------ 435
consensus_6158#0      CTTTATTTATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGA 473
                      *   * *   *** *    * ***    *   *                           

consensus_6158#1      AAGATGCACGAGACCTACTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCA 463
consensus_6158#2      ------------------------------------------------------------
consensus_6158#0      CTCAGTGGCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGA-GTC 532
                                                                                  

consensus_6158#1      CGACAAAGAAAAATGACATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAA 523
consensus_6158#2      ------------------------------------------------------------
consensus_6158#0      CCAGAGTGAAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCC 592
                                                                                  

consensus_6158#1      GATACATTTCGACCTGCAAGAAAAGTTTCCTTTCCACAATATGGTCT 570
consensus_6158#2      -----------------------------------------------
consensus_6158#0      ACTGCTAGCCACTANTCATCTTTG----------------------- 616