These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 616 fasta sequence [ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGAAAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGACGAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAAATTATCATCCCAATCAATGATACTACAGAGTTAATGAAATTAAAAATAAGAAAAAAACATTGGAATTTCTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAAATATATAATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTATATAAAGACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAATCTTTATTTATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGACTCAGTGGCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGAGTCCCAGAGTGAAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCCACTGCTAGCCACTANTCATCTTTG] [+] EMBL CD202013 [ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGAAAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGACGAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAAATTATCATCCCAATCAATGATACTACAGAGTTAATGAAATTAAAAATAAGAAAAAAACATTGGAATTTCTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAAATATATAATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTATATAAAGACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAATCTTTATTTATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGACTCAGTGGCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGAGTCCCAGAGTGAAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCCACTGCTAGCCACTANTCATCTTTG] consensusID : consensus_6158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATATTTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCACCACTGCAACCACCCTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTAAAGATGCACGAGACCTACTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCACGACAAAGAAAAATGACATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAAGATACATTTCGACCTGCAAGAAAAGTTTCCTTTCCACAATATGGTCT] [+] EMBL AI976627 [AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGAGAGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATATTTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCAGGGAAGGCCTCATCGAAGCCACCTCCACAATTGCCACCACTGCAACCACCCTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTAAAGATGCACGAGACCTACTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCACGACAAAGAAAAATGACATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAAGATACATTTCGACCTGCAAGAAAAGTTTCCTTTCCACAATATGGTCT] consensusID : consensus_6158#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence [GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTTCTTTTTAGAACGAATAGGTTTTATTCATCTCGAATTCAAACACCACTATTTTACAGTGAGTTGAATTGACAGGTGTGTACAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCATGGAAGGCCTCATCGAATCCACCTCCACAATTGCCACCACTGCAACCACCACCCAGTACGGTAATGCAG] [+] EMBL AI975068 [GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTTCTTTTTAGAACGAATAGGTTTTATTCATCTCGAATTCAAACACCACTATTTTACAGTGAGTTGAATTGACAGGTG ] [+] EMBL AI974944 [ AGGTTTTATTCATCTCGAATTCAAACACGACTATATTACAGTGAGTTGAATTGACAGGTGTGTACAAAAATAGGACAGTGGAGAGTGTGACACAAACAAATTAGAATGATCCACAACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTTGCCGCCTTTGCCACCTTTGCCACCACCCTTACCCTTACCGCTACCACCGCCATAACCCTTTCCATAATTGTTGCCTTTACTACCACCTTTTCCAAAGCCGTTGCCACCGTTACCATAATCACCGCCATAGGGGGCATGGAAGGCCTCATCGAATCCACCTCCACAATTGCCACCACTGCAACCACCACCCAGTACGGTAATGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6158#1 ------------------------------------------------------------ consensus_6158#2 ---GTAATGCAGCTGCATGGCATGTATTTTTCTTTTTTTTTTTT-CTTTTTAGAACGAAT 56 consensus_6158#0 ATTACGCCGGGAAATAGAGGCAGATATGAAAAGGATGAATATCAGCTGAAAAGAACTGGA 60 consensus_6158#1 AGGTTTTATTCATCTCGAATTCAAACAC-GACTATATTACAGTGAGTTGAATT----GAG 55 consensus_6158#2 AGGTTTTATTCATCTCGAATTCAAACAC-CACTATTTTACAGTGAGTTGAATT----GAC 111 consensus_6158#0 AAGGATTGCCCAGGACAGAGTTGGATGGAGAATGCTTGTGAGCGCCCTATGCTCCTCGAC 120 * * ** ** * * * * * * * ** * * * ** consensus_6158#1 AGGTGTGTAGAAAAATAGGACAGTGGAGAGTGTGAC-ACAAACAAATTAGAATGATCCAC 114 consensus_6158#2 AGGTGTGTACAAAAATAGGACAGTGGAGAGTGTGAC-ACAAACAAATTAGAATGATCCAC 170 consensus_6158#0 GAAGGGTAACAGGCGTAAGTAAGTAAGTAATTTGTTTAGAAATAAACCACAA--ATTATC 178 * * * ** * *** * * ** * *** *** * ** ** * consensus_6158#1 AACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTT 174 consensus_6158#2 AACTCAACTGGTGCCTCAGTAACCGCCTCCATAATGGCTGGGTTTGTAAGTGCCACCTTT 230 consensus_6158#0 ATCCCAATCAATGATAC---TACAGAGTTAATGA-AATTAAAAATAAGAAAAAAACATTG 234 * * *** ** * ** * * ** * * * * ** ** consensus_6158#1 GC-CGCCTTTGCCACCTTTGCCAC-CACCCTTACCCT-TACCGCTACCACCGCCATAACC 231 consensus_6158#2 GC-CGCCTTTGCCACCTTTGCCAC-CACCCTTACCCT-TACCGCTACCACCGCCATAACC 287 consensus_6158#0 GAATTTCTTTGTTTTACATGACACACATTTTCAGATTATTCCAATGATACTTCAAGAGAA 294 * ***** ** *** ** * * * * ** * ** * * * consensus_6158#1 CTTTCCATATTTGTTGCCTTTACTACCACCTT----TTCCAAAGCCGTTGCCACCGTTAC 287 consensus_6158#2 CTTTCCATAATTGTTGCCTTTACTACCACCTT----TTCCAAAGCCGTTGCCACCGTTAC 343 consensus_6158#0 ATATATAATAAAACTGAATTTTATCTTATTAAAAAGTTACACTATTACTCACTGCATTAT 354 * * * ** *** * * ** ** * * * *** consensus_6158#1 CATAATCAC-CGCCATAGGGGGCAGGGAAGGCCTCA--TCGAAGCCACCTCCACAATTGC 344 consensus_6158#2 CATAATCAC-CGCCATAGGGGGCATGGAAGGCCTCA--TCGAATCCACCTCCACAATTGC 400 consensus_6158#0 -ATAAAGACATGAAACTAAGATTATGGAAACTTTAAAGTCTAGTCACCCTTTAGGATAAT 413 **** ** * * * * **** * * ** * * *** * ** consensus_6158#1 CACCACT-GCAACCACCCTCTAGTATACTATGGTTCCCCCTGCGTTCTCGGATCTTGGTA 403 consensus_6158#2 CACCACT-GCAACCACCACCCAGTACGGTAATGCAG------------------------ 435 consensus_6158#0 CTTTATTTATAACAATAAACTAGTCTGATTTTGAATTGCACAAGCAAGTGGTTATCAGGA 473 * * * *** * * *** * * consensus_6158#1 AAGATGCACGAGACCTACTCTTTAAAAAGTTTTATTTTGGACTGTATAATATTCACTGCA 463 consensus_6158#2 ------------------------------------------------------------ consensus_6158#0 CTCAGTGGCCGAGTAGATAACGCGATGGCGTTTGAAACGAAAGGTACTGAGTTCGA-GTC 532 consensus_6158#1 CGACAAAGAAAAATGACATTGAATTTAAAGCCAATATAGTGATCGGCCTAAACCAAATAA 523 consensus_6158#2 ------------------------------------------------------------ consensus_6158#0 CCAGAGTGAAAATCAACTCTGAGTCCCAAATAGGACGAAACGCGCGTCANACTGGATTCC 592 consensus_6158#1 GATACATTTCGACCTGCAAGAAAAGTTTCCTTTCCACAATATGGTCT 570 consensus_6158#2 ----------------------------------------------- consensus_6158#0 ACTGCTAGCCACTANTCATCTTTG----------------------- 616 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||