cluster # 6159

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Schistosoma mansoni
cluster # 6159 cluster # 6159 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6159#0 length = 733 sequences # 2

consensus_6159#1 length = 573 sequences # 2

consensusID : consensus_6159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 733
fasta sequence

                              [CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTGTACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACGGAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTGCTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTGGATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTTTAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAACAAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACATCAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGCAAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATATCATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCAATATTGATGANCATGATGANNTATGAT-ACACTGATCAATCTAGATTACGTACACTTCGAAGACGAAGATATTATCGATCATGGCAAGCAACTTCACCTTCTATGTCAGATAATCACGAATTATTAGAAATGAATGAACA]

[+] EMBL CD117017             [CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTGTACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACGGAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTGCTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTGGATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTTTAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAACAAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACATCAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGCAAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATATCATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCAATATTGATGANCATGATGANNTATGAT ACACTGATCAATCTAGATTACGTA                                                                                        ]
[-] EMBL CD116787             [                                                                                                                                                                                                                                                      TGAGCGCATTTAAGGTAAAACATAACCCATACATTTTATCGCATAGTAGACGTTTAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAACAAGATGTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACATCAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGCAAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATATCATCTGAACAAACTTCTGTTATGCCTCAAACTTCTGATACTGCTATATCTTTCAGTATTGATGACAATGATGA TAATGATAACACTGATCAATCTAGATTACGTACACTTCGAAGACGAAGATATTATCGATCATGGCAAGCAACTTCACCTTCTATGTCAGATAATCACGAATTATTAGAAATGAATGAACA]




>consensus_6159#0
CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTG
TACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACG
GAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTG
CTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTG
GATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTT
TAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAAC
AAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACAT
CAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGC
AAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATAT
CATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCAATATTG
ATGANCATGATGANNTATGATACACTGATCAATCTAGATTACGTACACTTCGAAGACGAA
GATATTATCGATCATGGCAAGCAACTTCACCTTCTATGTCAGATAATCACGAATTATTAG
AAATGAATGAACA

consensusID : consensus_6159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 573
fasta sequence

                              [GATTGAGTAATTTATTACATACTGCTGATTCAAGTGTTTGTATAAATCTTTTTCATGAATTAGTTAATAAAGGTGTATGGTTAGAATTACTACAATTGGCATCATCGATACCAAATAATGACTTTAATTTTTCGTTTCCCATGAAAAATGAATGGGAAGATAATGTGAAAATAACTAATTCCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAGGTACTGAAATGAAATATATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATCATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATCATTATAATCAGCATCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAATTCATATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATCTACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTCAATTTATAATTGGTGTATTGGAGTCGAACTATC]

[+] EMBL CD159186             [GATTGAGTAATTTATTACATACTGCTGATTCAAGTGTTTGTATAAATCTTTTTCATGAATTAGTTAATAAAGGTGTATGGTTAGAATTACTACAATTGGCATCATCGATACCAAATAATGACTTTAATTTTTCGTTTCCCATGAAAAATGAATGGGAAGATAATGTGAAAATAACTAATTCCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAGGTACTGAAATGAAATATATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATCATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATCATTATAATCAGCATCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAATTCATATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATCTACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTCAATTTATAATTGGTGTATTGGAGTCGAACTATC]
[-] EMBL CD148966             [                                                                                                                                                    TGAATGGGAAGATAATGTGAAAATAACTAATTCCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAGGTACTGAAATGAAATATATTGGTGAATGTAATCAAAGCAATGAAAAAACCAATGATGATCATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTTCAATACTTCTCATCATTATAATCAGCGTCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAATTCATATTTTAATTGTTTATCAAACATTGAGCTTTTTACGCAATGTACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCACTCAATTTATAATT                      ]




>consensus_6159#1
GATTGAGTAATTTATTACATACTGCTGATTCAAGTGTTTGTATAAATCTTTTTCATGAAT
TAGTTAATAAAGGTGTATGGTTAGAATTACTACAATTGGCATCATCGATACCAAATAATG
ACTTTAATTTTTCGTTTCCCATGAAAAATGAATGGGAAGATAATGTGAAAATAACTAATT
CCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAG
GTACTGAAATGAAATATATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATC
ATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATC
ATTATAATCAGCATCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTA
AAAATAGTGCACAAATTCATATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATC
TACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTC
AATTTATAATTGGTGTATTGGAGTCGAACTATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6159#0      CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTG 60
consensus_6159#1      ------------------------------------------------------------
                                                                                  

consensus_6159#0      TACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACG 120
consensus_6159#1      ------------------------------------------------------------
                                                                                  

consensus_6159#0      GAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTG 180
consensus_6159#1      -------GATTGAGTAATTT--ATTACATACTGCTGATTCAAGTGTTTGTATAAAT-CTT 50
                               ****  ** *   ****  **    *     ** *  ** ** ***  ** 

consensus_6159#0      CTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTG 240
consensus_6159#1      TTTCATGAATT--AGTTAATAA------AGGTGTATGGTTAGAATTACT--ACAATTG-G 99
                       * * *  *    *    ****      ***  **      ****  **  *   *** *

consensus_6159#0      GATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTT 300
consensus_6159#1      CATCATCGATACCAAATAATG----ACTTTAATTTTTCGTTT---CCCATGAAAAATGAA 152
                       ** ** **   **  *** *    ** * **   * * ***   * ***   * * *  

consensus_6159#0      TAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAAC 360
consensus_6159#1      TGGGAAGATAA---------TGTGAAA---ATAACTAATTCCGATATGAATCCAGGAAAT 200
                      *  **    **           *****   ** *  *   **   ** *    *  *** 

consensus_6159#0      AAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACAT 420
consensus_6159#1      AGAGTTCCTGTAAT--ACCAGGAATCATGGTATCACATCA-AGGTACTGAAATGAAATAT 257
                      *   *    * ***  * **  *    * *****   *   *   *  *   ***** **

consensus_6159#0      CAACATGTATG-GCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAG 479
consensus_6159#1      ATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATCATTCGAAACAAAAATAT 317
                           ** ***   ******      * **    * * ***  *     ***** ** * 

consensus_6159#0      CAAGAAAATGAAAATCAAGATA-TTATTGTAGAACACAGTGATTTTATCAGTGAAAATAT 538
consensus_6159#1      CAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATCATTAT-AATCAGCATCA 376
                      ***  ****  ****  *   * *  **  *  **         **** * * *  **  

consensus_6159#0      ATCATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCA-ATA 597
consensus_6159#1      ATTATTTTTGTCGAATAATAT-ACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAA 435
                      ** ** *      * *  * * *      *** **  * *      * **  * ** * *

consensus_6159#0      TTGATGANCATGATGANNTATGATACACTGATCAATCTAGATTACGTACACTTCGAAGAC 657
consensus_6159#1      TTCAT-ATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATCTACTTCGTGATGAA 494
                      ** ** *   * **    *** * *** *** *  * **    *  ***     ** ** 

consensus_6159#0      GAAGATATTATCG--ATCATG-GCAAGCAACTTCACCTTCTATGTCAGATAATCACGAAT 714
consensus_6159#1      CAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTCAATTTATAATTGGT 554
                       **   **   *    *  ** *  ****           * * ***  * ** *    *

consensus_6159#0      -TATTAGAAATGAATGAACA 733
consensus_6159#1      GTATTGGAGTCGAACTATC- 573
                       **** **   ***  * *