These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence [CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTGTACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACGGAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTGCTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTGGATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTTTAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAACAAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACATCAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGCAAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATATCATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCAATATTGATGANCATGATGANNTATGAT-ACACTGATCAATCTAGATTACGTACACTTCGAAGACGAAGATATTATCGATCATGGCAAGCAACTTCACCTTCTATGTCAGATAATCACGAATTATTAGAAATGAATGAACA] [+] EMBL CD117017 [CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTGTACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACGGAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTGCTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTGGATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTTTAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAACAAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACATCAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGCAAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATATCATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCAATATTGATGANCATGATGANNTATGAT ACACTGATCAATCTAGATTACGTA ] [-] EMBL CD116787 [ TGAGCGCATTTAAGGTAAAACATAACCCATACATTTTATCGCATAGTAGACGTTTAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAACAAGATGTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACATCAACATGTATGGCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAGCAAGAAAATGAAAATCAAGATATTATTGTAGAACACAGTGATTTTATCAGTGAAAATATATCATCTGAACAAACTTCTGTTATGCCTCAAACTTCTGATACTGCTATATCTTTCAGTATTGATGACAATGATGA TAATGATAACACTGATCAATCTAGATTACGTACACTTCGAAGACGAAGATATTATCGATCATGGCAAGCAACTTCACCTTCTATGTCAGATAATCACGAATTATTAGAAATGAATGAACA] consensusID : consensus_6159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 573 fasta sequence [GATTGAGTAATTTATTACATACTGCTGATTCAAGTGTTTGTATAAATCTTTTTCATGAATTAGTTAATAAAGGTGTATGGTTAGAATTACTACAATTGGCATCATCGATACCAAATAATGACTTTAATTTTTCGTTTCCCATGAAAAATGAATGGGAAGATAATGTGAAAATAACTAATTCCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAGGTACTGAAATGAAATATATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATCATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATCATTATAATCAGCATCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAATTCATATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATCTACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTCAATTTATAATTGGTGTATTGGAGTCGAACTATC] [+] EMBL CD159186 [GATTGAGTAATTTATTACATACTGCTGATTCAAGTGTTTGTATAAATCTTTTTCATGAATTAGTTAATAAAGGTGTATGGTTAGAATTACTACAATTGGCATCATCGATACCAAATAATGACTTTAATTTTTCGTTTCCCATGAAAAATGAATGGGAAGATAATGTGAAAATAACTAATTCCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAGGTACTGAAATGAAATATATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATCATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATCATTATAATCAGCATCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAATTCATATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATCTACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTCAATTTATAATTGGTGTATTGGAGTCGAACTATC] [-] EMBL CD148966 [ TGAATGGGAAGATAATGTGAAAATAACTAATTCCGATATGAATCCAGGAAATAGAGTTCCTGTAATACCAGGAATCATGGTATCACATCAAGGTACTGAAATGAAATATATTGGTGAATGTAATCAAAGCAATGAAAAAACCAATGATGATCATTCGAAACAAAAATATCAAACAAATTTAAATTTATTCAATCGTTTCAATACTTCTCATCATTATAATCAGCGTCAATTATTTTTGTCGAATAATATACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAATTCATATTTTAATTGTTTATCAAACATTGAGCTTTTTACGCAATGTACTTCGTGATGAACAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCACTCAATTTATAATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6159#0 CTCAATTTATAATTGGTGTATTGGAGTCGAACTATCCTCAACCAGTCAAAGAACAGGCTG 60 consensus_6159#1 ------------------------------------------------------------ consensus_6159#0 TACTTGTGATTGCACATATTGCCACTGGTCGAACTGCACGATGCGAAGTTCATCGAAACG 120 consensus_6159#1 ------------------------------------------------------------ consensus_6159#0 GAGATTTAGTTGAAAAACTCACATTATTTATGCGTTCACAAAATAGTTATACAAAAGCTG 180 consensus_6159#1 -------GATTGAGTAATTT--ATTACATACTGCTGATTCAAGTGTTTGTATAAAT-CTT 50 **** ** * **** ** * ** * ** ** *** ** consensus_6159#0 CTGCGTTGACCGCAACATATAATCTTTTAGGCTTACAAACTGAATGTCTTGATTCTTGTG 240 consensus_6159#1 TTTCATGAATT--AGTTAATAA------AGGTGTATGGTTAGAATTACT--ACAATTG-G 99 * * * * * **** *** ** **** ** * *** * consensus_6159#0 GATTATTGAGCGCATTTAAGGTAAAACATAAACCATACATTTTATCGCATAGTAGACGTT 300 consensus_6159#1 CATCATCGATACCAAATAATG----ACTTTAATTTTTCGTTT---CCCATGAAAAATGAA 152 ** ** ** ** *** * ** * ** * * *** * *** * * * consensus_6159#0 TAAGAGTTCAACATCACCGTCATGAAACTCATCATCATCACCATCATCATGGAAAAAAAC 360 consensus_6159#1 TGGGAAGATAA---------TGTGAAA---ATAACTAATTCCGATATGAATCCAGGAAAT 200 * ** ** ***** ** * * ** ** * * *** consensus_6159#0 AAGATCTAGGCAATCAAACAACATCTTTAGTATCTTGTAGTATAAATCGTCGTGAAACAT 420 consensus_6159#1 AGAGTTCCTGTAAT--ACCAGGAATCATGGTATCACATCA-AGGTACTGAAATGAAATAT 257 * * * *** * ** * * ***** * * * * ***** ** consensus_6159#0 CAACATGTATG-GCTCAAAATGCCTTAGAAGAAGAAGTTGAAGAAGAAGAACAACAACAG 479 consensus_6159#1 ATTGGTGAATGTAATCAAAACAATGAAAAAACCAATGATGATCATTCGAAACAAAAATAT 317 ** *** ****** * ** * * *** * ***** ** * consensus_6159#0 CAAGAAAATGAAAATCAAGATA-TTATTGTAGAACACAGTGATTTTATCAGTGAAAATAT 538 consensus_6159#1 CAAACAAATTTAAATTTATTCAATCGTTCCAATACTTCTCATCATTAT-AATCAGCATCA 376 *** **** **** * * * ** * ** **** * * * ** consensus_6159#0 ATCATCTGAACAAACTTCTGTTATGCCACAAACTTCTGATACTGCTATATCTTTCA-ATA 597 consensus_6159#1 ATTATTTTTGTCGAATAATAT-ACAATCTAAATTTAAGTTTTCTAAAAATAGTGCACAAA 435 ** ** * * * * * * *** ** * * * ** * ** * * consensus_6159#0 TTGATGANCATGATGANNTATGATACACTGATCAATCTAGATTACGTACACTTCGAAGAC 657 consensus_6159#1 TTCAT-ATTTTAATTGTTTATCANACATTGAGCTTTTTACGCAATCTACTTCGTGATGAA 494 ** ** * * ** *** * *** *** * * ** * *** ** ** consensus_6159#0 GAAGATATTATCG--ATCATG-GCAAGCAACTTCACCTTCTATGTCAGATAATCACGAAT 714 consensus_6159#1 CAATTCATAGACACTGTAGTGAGTGAGCATTGGTGGAACATCTCTCAATTTATAATTGGT 554 ** ** * * ** * **** * * *** * ** * * consensus_6159#0 -TATTAGAAATGAATGAACA 733 consensus_6159#1 GTATTGGAGTCGAACTATC- 573 **** ** *** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||