cluster # 6162

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Schistosoma mansoni
cluster # 6162 cluster # 6162 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6162#0 length = 382 sequences # 2

consensus_6162#1 length = 320 sequences # 1
consensus_6162#2 length = 158 sequences # 1

consensusID : consensus_6162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 382
fasta sequence

                              [CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCC-GATTCAACCTGTTCTACC-ACTTCACTTTCTGCGTCCGCTTCA-A-C-TTGCCCCAA-TGTCTC-ACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATACGCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATT]

[+] EMBL CD200456             [CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCC GATTCAACCTGTTCTACC ACTTCACTTTCTGCGTCCGCTTCA A C TTGCCCCAA TGTCTC ACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATACGCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATT]
[+] EMBL CD200459             [CAATCGTTCCCGTTCCGGTTGTGCTGCATTCTCTGCAAGCGCCTCACACTCCTATTCGACTGGATCGAACACAGACACTCGTTCCGGATTCAACCTGTTCTACCTACTTCACTTTCTGCGTCCGTTTCATAGCTTTGCCCCAATTGTCTCTACCGAACACTTCGAGTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATACGCC TTCACCAAc                                                                                                                                 ]




>consensus_6162#0
CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGAC
TGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTC
CGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTC
ACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATAC
GCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGACACGCTCAACCAATCGT
TCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCG
AACACAGACACACGTTCCGATT

consensusID : consensus_6162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 320
fasta sequence

                              [CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATCTCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACC]

[+] EMBL CD067936             [CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATCTCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACC]




>consensus_6162#1
CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATC
TCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT
CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCA
CTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCG
ACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCA
TCTCACCGACACGCTCAACC

consensusID : consensus_6162#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 158
fasta sequence

                              [ACCCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCACTTCACTTTCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG]

[-] EMBL CD059842             [ACCCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCACTTCACTTTCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG]




>consensus_6162#2
ACCCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCC
AATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCACTTCACTT
TCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6162#1      CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATC 60
consensus_6162#2      ------------------------------------------------------------
consensus_6162#0      ------------------------------------------------------------
                                                                                  

consensus_6162#1      TCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT 120
consensus_6162#2      -------AC-CCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT 52
consensus_6162#0      ----------------CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT 44
                                      ********************************************

consensus_6162#1      CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCA 180
consensus_6162#2      CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCA 112
consensus_6162#0      CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCA 104
                      ******************************************************* ****

consensus_6162#1      CTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCG 240
consensus_6162#2      CTTCACTTTCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG-------------- 158
consensus_6162#0      CTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCG 164
                      **************************  ** *   *   *  * *               

consensus_6162#1      ACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCA 300
consensus_6162#2      ------------------------------------------------------------
consensus_6162#0      ACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCA 224
                                                                                  

consensus_6162#1      TCTCACCGACACGCTCAACC---------------------------------------- 320
consensus_6162#2      ------------------------------------------------------------
consensus_6162#0      TCTCACCTTCAAATACGCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGAC 284
                                                                                  

consensus_6162#1      ------------------------------------------------------------
consensus_6162#2      ------------------------------------------------------------
consensus_6162#0      ACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTC 344
                                                                                  

consensus_6162#1      --------------------------------------
consensus_6162#2      --------------------------------------
consensus_6162#0      CAATTCGACTGGAGCGAACACAGACACACGTTCCGATT 382