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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 614 fasta sequence
[AAACAAACCATAGCAAACAAGCAAATGAAGAGGAGCATTAGAGCTGACAAGCAGAAATGCATGGAAGACCTAGCAATGATAGTAGAAAGTGCTTCAAGAGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGNCACATAGAGTATATGTGAGATTGTGAACTTGGTTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGG]
[+] EMBL CD145785 [AAACAAACCATAGCAAACAAGCAAATGAAGAGGAGCATTAGAGCTGACAAGCAGAAATGCATGGAAGACCTAGCAATGATAGTAGAAAGTGCTTCAAGAGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGNCACATAGAGTATATGTGAGATTGTGAACTTGGTTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGG]
[+] EMBL CD145863 [AAACAAACCATAGCAAACAAGCAAATGAAGAGGAGCATTAGAGCTGACAAGCAGAAATGCATGGAAGACCTAGCAATGATAGTAGAAAGTGCTTCAAGAGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTG ]
consensusID : consensus_6166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence
[CAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAAGAGACACTAGAAGTTGAACAAAAACACTCATCTTGCCAATAAAACAACCACTATAAGCCAAACGTAATAGAAGATTGTTCAGTGGGAAAGNNNNNNNNNNNNNN]
[+] EMBL CD089339 [CAAACTATCTTCTGTCTTCACTACTCTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATTATTACAGTTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAAGAGACACTAGAAGTTGAACAAAAACACTCATCTTGCCAATAAAACAACCACTATAAGCCAAACGTAATAGAAGATTGTTCAGTGGGAAAGNNNNNNNNNNNNNN]
consensusID : consensus_6166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 102 fasta sequence
[GACCTCGGTACCCCAAATATCTTTGNAGCCATCACCTCACAATTACTCATAAGTAGTAAACTCAAGTCAACTACATCGACCATCACGACACCTGGCACAATC]
[+] EMBL CD066045 [GACCTCGGTACCCCAAATATCTTTGNAGCCATCACCTCACAATTACTCATAAGTAGTAAACTCAAGTCAACTACATCGACCATCACGACACCTGGCACAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6166#0 AAACAAACCATAGCAAACAAGCAAATGAAGAGGAGCATTAGAGCTGACAAGCAGAAATGC 60
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 ATGGAAGACCTAGCAATGATAGTAGAAAGTGCTTCAAGAGAAGGAATGCAACATAGAGTA 120
consensus_6166#2 -----------------------------------------GACCTCGGTACCCCAAATA 19
consensus_6166#1 -----------------------------------CAAACTATCTTCTGTCTTCACTACT 25
consensus_6166#0 TATGTGAGATTGTGAACTTGATTTTGGATT-GGCATATCGAGATTGTCTGTTGATTGTGC 179
consensus_6166#2 TCTTTGNAGCCATCACCTCACAATT--ACT-CATAAGTAGTAAACTCAAGTCAACTACAT 76
consensus_6166#1 CTCCTCTTACTGGAACAATAAAATTAGATCAGATCAGTCTTCATTTCCGATT-ATTACAG 84
* * ** * * * * * *
consensus_6166#0 CAGGTGTCGTGATGGTCGATGTAGT--TGACTTGAGTTTTCTACTTATGAGTAATTGTGA 237
consensus_6166#2 CGACCATCACGACACCTGGCACAAT--C-------------------------------- 102
consensus_6166#1 TTACTATTATTGTGATTTTTGCATTGACCCACACAGTTGTCAAGGTGGAAGAGACACTAG 144
* * *
consensus_6166#0 GGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAG 297
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 AAGTTGAACAAAAACACTCATCTTGCCAATAAAACAACCACTATAAGCCAAACGTAATAG 204
consensus_6166#0 TAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGAT 357
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 AAGATTGTTCAGTGGGAAAGNNNNNNNNNNNNNN-------------------------- 238
consensus_6166#0 CCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATT 417
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGNCACAT 477
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 AGAGTATATGTGAGATTGTGAACTTGGTTTTGGATTGGCATATCGAGATTGTCTGTTGAT 537
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 TGTGCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGT 597
consensus_6166#2 ------------------------------------------------------------
consensus_6166#1 ------------------------------------------------------------
consensus_6166#0 GAGGTGATAGTGTGTGG 614
consensus_6166#2 -----------------
consensus_6166#1 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||