cluster # 6172

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Schistosoma mansoni
cluster # 6172 cluster # 6172 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6172#0 length = 462 sequences # 2

consensus_6172#1 length = 382 sequences # 1
consensus_6172#2 length = 247 sequences # 1

consensusID : consensus_6172#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 462
fasta sequence

                              [ACTATGTTTTGCTTTTTGCTGTTATCTGCGTTATAATCAACGCTATTACTATTGTTTTGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAA-TGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAACCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGATCAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG]

[+] EMBL CD065829             [ACTATGTTTTGCTTTTTGCTGTTATCTGCGTTATAATCAACGCTATTACTATTGTTTTGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAA TGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAACCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGATCAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG]
[+] EMBL CD065805             [                                                                                                                                                                                                                                                                   TAATTGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAACCGTTTGGAAAGATCTTTGCCACGAACGAAT                                                                       ]




>consensus_6172#0
ACTATGTTTTGCTTTTTGCTGTTATCTGCGTTATAATCAACGCTATTACTATTGTTTTGA
TGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTA
CAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGT
TGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTG
TTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGT
TGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCAA
CCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGAT
CAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG

consensusID : consensus_6172#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATTGATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATG]

[+] EMBL CD063739             [CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATTGATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGATGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTACCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTGTTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTTGTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAGTTGGATCTATTTATCGGTGATG]




>consensus_6172#1
CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATT
GATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGA
TGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTA
CCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTG
TTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTT
GTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAG
TTGGATCTATTTATCGGTGATG

consensusID : consensus_6172#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [GCAAAAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCAATACAATAAGAAATAGATCACGTCCATTGCCTCCACTGCCACCTACACCGATTCGATCATCGTCGATTACACGGACAGAGTATTCAATCACTCCTCATCACCATCAATTGAAACAAATCAATCCTATAAGTAATAGTATAGGTGGAATTACACTTAATAGTAATGAAACAGCTCCCTCCGTACCTGAGCGGA]

[+] EMBL CD077868             [GCAAAAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCAATACAATAAGAAATAGATCACGTCCATTGCCTCCACTGCCACCTACACCGATTCGATCATCGTCGATTACACGGACAGAGTATTCAATCACTCCTCATCACCATCAATTGAAACAAATCAATCCTATAAGTAATAGTATAGGTGGAATTACACTTAATAGTAATGAAACAGCTCCCTCCGTACCTGAGCGGA]




>consensus_6172#2
GCAAAAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCAATACA
ATAAGAAATAGATCACGTCCATTGCCTCCACTGCCACCTACACCGATTCGATCATCGTCG
ATTACACGGACAGAGTATTCAATCACTCCTCATCACCATCAATTGAAACAAATCAATCCT
ATAAGTAATAGTATAGGTGGAATTACACTTAATAGTAATGAAACAGCTCCCTCCGTACCT
GAGCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6172#0      ------------------------------------------------------ACTATG 6
consensus_6172#1      CGGAGGAGCTGTTTCATTACTATTAAGTGTAATTCCACCTATACTATTACTTATAGGATT 60
consensus_6172#2      ------------------------------------------------------------
                                                                                  

consensus_6172#0      TTTTGCTTTTTGCTGTTATC--TGCGTTATAATCAA---CGCTATTACTATTGTTT-TGA 60
consensus_6172#1      GATTAGTTTCAATTGATGGTGATGAGGAGTGATTGAATTCTCTGTCCGTGTAATCGACGA 120
consensus_6172#2      --------------------------------------------------------GCAA 4
                                                                                 *

consensus_6172#0      TGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTA 120
consensus_6172#1      TGATGTTGAGTAGTGTGAGAATCATCATTCGGCGTTGTAATGATTTTCCCGCGTGAACTA 180
consensus_6172#2      AAAGCAAATACATAGTACCAATTGTAACTTCAAGATTTGAATCTAATCCCA-ATACAATA 63
                        *        *  **   ***  * * *    * * * *   *  ****   *  * **

consensus_6172#0      C-AGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTG 179
consensus_6172#1      CCAGGATTATCATGATCACTAACTGTACTAATGGAACTAGTGACAGGGGTAATACTATTG 240
consensus_6172#2      AGAAATAGATCACGTCCATTGCCTCCACTG------CCACCTACACCGATTCGATCATCG 117
                        *     **** *  ** *  **  ***       * *   ***  * *   *  ** *

consensus_6172#0      TTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTT 239
consensus_6172#1      TTGGTAGTGTTTAATGTTGTTGGTCGACCACTAGAAACATTTATCATTTGAATTGGTTTT 300
consensus_6172#2      TCGATTACACGGACAG--AGTATTCAATCACTCCTCATCACCATCAATTGAAACAA---- 171
                      * * *       *  *    *  ** * ****    *     **** *****        

consensus_6172#0      GTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAG 299
consensus_6172#1      GTTAATGCTGGACGATCCGGTAATGCTGGGGGCTCTGAAGATAATATATTGAAAGAAGAG 360
consensus_6172#2      ATCAATCCTATAAG---TAATAGTATAGGTGGAATTACACTTAATA--GTAATGAAACAG 226
                       * *** **  * *      ** *   ** **   *  *  *****   * *   ** **

consensus_6172#0      TTGGATCTATTTATCGGTGATGAATACGTTATCGATTCCAGAGGGGTACGTCCACTCCCA 359
consensus_6172#1      TTGGATCTATTTATCGGTGATG-------------------------------------- 382
consensus_6172#2      CTCCCTCCGTACCTGAGCGGA--------------------------------------- 247
                       *   **  *   *  * *                                         

consensus_6172#0      ACCGTTTGGAAAGATCTTTGCAACGAACGAATCGACGAACCATGATCAGATCCCGAATGA 419
consensus_6172#1      ------------------------------------------------------------
consensus_6172#2      ------------------------------------------------------------
                                                                                  

consensus_6172#0      TCAGGTTTCGAGAAAATTCTTGGGACAGTTGATTGAGCGATTG 462
consensus_6172#1      -------------------------------------------
consensus_6172#2      -------------------------------------------