These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATATAACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGCGCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTACATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGGGACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATTATGATGGAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAGTTCATATATGGTTACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATCCGTGAACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAACTTTTATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCATTTTCATACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAAAGCCTAGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTGAAGCTAGATCACCAGGGA] [+] EMBL CD087645 [GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATATAACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGCGCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTACATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGGGACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATTATGATGGAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAGTTCATATATGGTTACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATCCGTGAACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAACTTTTATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCATTTTCATACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAAAGCCTAGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTGAAGCTAGATCACCAGGGA] consensusID : consensus_6175#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [ATTCACACACGCTACCTGTATCAAATACCTCCAGTCGCCCTTTCGAACACGAAGATAAGAGTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCTCTGTACGCTCTCAAAATTGTGATCACTCTTCAGGCATGAATAACCATCGATACTCCTGTGATACAGATAATCTTATTCCTAACAATATTGAAAAACGTTTGGTCGAAACTCCTTTGAAAGTTGATAGTAGTTACGAATCCAATAATATGAATGAGGATGGTAGTAGTTATGACGGAGGAAATGGTGGAGGGACGAGAGGCTTGTTGGCTGTATCACCGGGTGTTAGTTTAACTAGACGTCGATTCCTTAGAGCTTAAAGAGAATGAATCAGTGGAACAGAATGGTTTATCAACTGACTCTCAACTTCAAAAGAGTTCACTTGATAATAAACAAACAAAGTCAGGTTATCTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGTTT] [+] EMBL CD068285 [ATTCACACACGCTACCTGTATCAAATACCTCCAGTCGCCCTTTCGAACACGAAGATAAGAGTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCTCTGTACGCTCTCAAAATTGTGATCACTCTTCAGGCATGAATAACCATCGATACTCCTGTGATACAGATAATCTTATTCCTAACAATATTGAAAAACGTTTGGTCGAAACTCCTTTGAAAGTTGATAGTAGTTACGAATCCAATAATATGAATGAGGATGGTAGTAGTTATGACGGAGGAAATGGTGGAGGGACGAGAGGCTTGTTGGCTGTATCACCGGGTGTTAGTTTAACTAGACGTCGATTCCTTAGAGCTTAAAGAGAATGAATCAGTGGAACAGAATGGTTTATCAACTGACTCTCAACTTCAAAAGAGTTCACTTGATAATAAACAAACAAAGTCAGGTTATCTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGTTT] consensusID : consensus_6175#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [TTTTTTTTTTTTTTTTTGCTGTCAGAGTTATTTATATTTATTTATTTAAACACATACATATTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGAAGAAAAGGGATGAAAAGATAAGGCGGACTGAAATGTACAGCCGGAAGACTCTTTCAGTTAAGAAAGTTAGAACCACTCTTTATGAAGAAAGTAAAAGAAGGTTACAGCAGGCTCGCCACTGGCTTCTATTCTGAGCCATATCTGATAACGTTTCTAGCCACTGTGTTGCACCATCTCTTGGACCCCAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTACTTTCACACCACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG] [+] EMBL AI395588 [TTTTTTTTTTTTTTTTTGCTGTCAGAGTTATTTATATTTATTTATTTAAACACATACATATTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGAAGAAAAGGGATGAAAAGATAAGGCGGACTGAAATGTACAGCCGGAAGACTCTTTCAGTTAAGAAAGTTAGAACCACTCTTTATGAAGAAAGTAAAAGAAGGTTACAGCAGGCTCGCCACTGGCTTCTATTCTGAGCCATATCTGATAACGTTTCTAGCCACTGTGTTGCACCATCTCTTGGACCCCAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTACTTTCACACCACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG] consensusID : consensus_6175#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 116 fasta sequence [TNCTAGNAGGCNATCCCCGGGACAATAGAAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCA] [+] EMBL CD127460 [TNCTAGNAGGCNATCCCCGGGACAATAGAAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6175#1 ------------------------------------------------------------ consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATAT 60 consensus_6175#2 ------------------------------------------------------------ consensus_6175#1 ------------------------ATTCACACACGCTACCTGTATCAAATACCTCCAGTC 36 consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 AACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGC 120 consensus_6175#2 ------------------------------------------------------------ consensus_6175#1 GCCCTTTCGAACACGAAGATAAGAGTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCT 96 consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 GCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTAC 180 consensus_6175#2 TTTTTTTTTTTTTTTTTGCTGTCAG--AGTTATTTATATTTATTTATTTAAACAC---AT 55 consensus_6175#1 CTGTACGCTCTCAAAATTGTGATCACTCTTCAGGCATGAATAACCATCGATACTCCTGTG 156 consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 ATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGG 240 consensus_6175#2 ACATATTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGA 115 consensus_6175#1 ATACAGATAATCTTATTCCTAACAATATTGAAAAACGTTTGGTCGA-AACTCCTTTGAAA 215 consensus_6175#3 -TNCTAGNAGGCN-ATCCCCGG-GACAATAGAAGACTT---------GAGTCATTCAACA 48 consensus_6175#0 GACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATT 300 consensus_6175#2 AGAAAAGGGATGAAAAGATAAGGCGGACTGAAATGTAC-AGCCGGAAGACTCTTTCAGTT 174 * * * * consensus_6175#1 GTTG-A--TAGTAGTTACGAATCCAATAA-TATGA-ATGAGGATGGTAGTAGTTATGACG 270 consensus_6175#3 ATT-----CGGCAATC-CGCTTACAGTAAGTGCTG-ATGAGTGAGATAGTAGAATTAACA 101 consensus_6175#0 ATGATG--GAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAG 358 consensus_6175#2 AAGAAAGTTAGAACCACTCTTTATGAAGAAAGTAA-AAGAAGGTTACAGCAGGCTCGCCA 233 * * * * * consensus_6175#1 GAGGAA-ATGGT---GGAGGGACGAGAGGCT-TGTTGGCTGTATCACCGGGTGTTAGTTT 325 consensus_6175#3 GAAGTA-ATAGT---AGCA----------------------------------------- 116 consensus_6175#0 TTCATATATGGT---TACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATC 415 consensus_6175#2 CTGGCTTCTATTCTGAGCCATATCTGATAACGTTTCTAGCC-ACTGTGTTGCACCATCTC 292 * * consensus_6175#1 AACTAGACGTCGATTCCTTAGAGCTTAAAGAGAATGAATCAGTGGAACAGAATGGTTTAT 385 consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 CGTGAACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAA 475 consensus_6175#2 T-TGGACCCCAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTA- 350 consensus_6175#1 CAACTGACTCTCAACTTCAAAAGAGTTCACTTGATAA-TAAACAAACAAAGTCAGGTTAT 444 consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 CTTTTATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCAT 535 consensus_6175#2 -CTTTCACACCACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG- 408 consensus_6175#1 CTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGTTT---------------------- 482 consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 TTTCATACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAA 595 consensus_6175#2 ------------------------------------------------------------ consensus_6175#1 ------------------------------------------------------------ consensus_6175#3 ------------------------------------------------------------ consensus_6175#0 AGCCTAGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTG 655 consensus_6175#2 ------------------------------------------------------------ consensus_6175#1 ------------------ consensus_6175#3 ------------------ consensus_6175#0 AAGCTAGATCACCAGGGA 673 consensus_6175#2 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||