cluster # 6175

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Schistosoma mansoni
cluster # 6175 cluster # 6175 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6175#0 length = 673 sequences # 1
consensus_6175#1 length = 482 sequences # 1

consensus_6175#2 length = 408 sequences # 1
consensus_6175#3 length = 116 sequences # 1

consensusID : consensus_6175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATATAACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGCGCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTACATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGGGACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATTATGATGGAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAGTTCATATATGGTTACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATCCGTGAACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAACTTTTATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCATTTTCATACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAAAGCCTAGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTGAAGCTAGATCACCAGGGA]

[+] EMBL CD087645             [GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATATAACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGCGCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTACATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGGGACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATTATGATGGAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAGTTCATATATGGTTACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATCCGTGAACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAACTTTTATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCATTTTCATACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAAAGCCTAGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTGAAGCTAGATCACCAGGGA]




>consensus_6175#0
GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATAT
AACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGC
GCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTAC
ATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGG
GACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATT
ATGATGGAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAGTT
CATATATGGTTACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATCCGTGA
ACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAACTTTT
ATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCATTTTCA
TACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAAAGCCT
AGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTGAAGCT
AGATCACCAGGGA

consensusID : consensus_6175#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 482
fasta sequence

                              [ATTCACACACGCTACCTGTATCAAATACCTCCAGTCGCCCTTTCGAACACGAAGATAAGAGTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCTCTGTACGCTCTCAAAATTGTGATCACTCTTCAGGCATGAATAACCATCGATACTCCTGTGATACAGATAATCTTATTCCTAACAATATTGAAAAACGTTTGGTCGAAACTCCTTTGAAAGTTGATAGTAGTTACGAATCCAATAATATGAATGAGGATGGTAGTAGTTATGACGGAGGAAATGGTGGAGGGACGAGAGGCTTGTTGGCTGTATCACCGGGTGTTAGTTTAACTAGACGTCGATTCCTTAGAGCTTAAAGAGAATGAATCAGTGGAACAGAATGGTTTATCAACTGACTCTCAACTTCAAAAGAGTTCACTTGATAATAAACAAACAAAGTCAGGTTATCTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGTTT]

[+] EMBL CD068285             [ATTCACACACGCTACCTGTATCAAATACCTCCAGTCGCCCTTTCGAACACGAAGATAAGAGTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCTCTGTACGCTCTCAAAATTGTGATCACTCTTCAGGCATGAATAACCATCGATACTCCTGTGATACAGATAATCTTATTCCTAACAATATTGAAAAACGTTTGGTCGAAACTCCTTTGAAAGTTGATAGTAGTTACGAATCCAATAATATGAATGAGGATGGTAGTAGTTATGACGGAGGAAATGGTGGAGGGACGAGAGGCTTGTTGGCTGTATCACCGGGTGTTAGTTTAACTAGACGTCGATTCCTTAGAGCTTAAAGAGAATGAATCAGTGGAACAGAATGGTTTATCAACTGACTCTCAACTTCAAAAGAGTTCACTTGATAATAAACAAACAAAGTCAGGTTATCTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGTTT]




>consensus_6175#1
ATTCACACACGCTACCTGTATCAAATACCTCCAGTCGCCCTTTCGAACACGAAGATAAGA
GTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCTCTGTACGCTCTCAAAATTGTGATC
ACTCTTCAGGCATGAATAACCATCGATACTCCTGTGATACAGATAATCTTATTCCTAACA
ATATTGAAAAACGTTTGGTCGAAACTCCTTTGAAAGTTGATAGTAGTTACGAATCCAATA
ATATGAATGAGGATGGTAGTAGTTATGACGGAGGAAATGGTGGAGGGACGAGAGGCTTGT
TGGCTGTATCACCGGGTGTTAGTTTAACTAGACGTCGATTCCTTAGAGCTTAAAGAGAAT
GAATCAGTGGAACAGAATGGTTTATCAACTGACTCTCAACTTCAAAAGAGTTCACTTGAT
AATAAACAAACAAAGTCAGGTTATCTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGT
TT

consensusID : consensus_6175#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [TTTTTTTTTTTTTTTTTGCTGTCAGAGTTATTTATATTTATTTATTTAAACACATACATATTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGAAGAAAAGGGATGAAAAGATAAGGCGGACTGAAATGTACAGCCGGAAGACTCTTTCAGTTAAGAAAGTTAGAACCACTCTTTATGAAGAAAGTAAAAGAAGGTTACAGCAGGCTCGCCACTGGCTTCTATTCTGAGCCATATCTGATAACGTTTCTAGCCACTGTGTTGCACCATCTCTTGGACCCCAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTACTTTCACACCACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG]

[+] EMBL AI395588             [TTTTTTTTTTTTTTTTTGCTGTCAGAGTTATTTATATTTATTTATTTAAACACATACATATTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGAAGAAAAGGGATGAAAAGATAAGGCGGACTGAAATGTACAGCCGGAAGACTCTTTCAGTTAAGAAAGTTAGAACCACTCTTTATGAAGAAAGTAAAAGAAGGTTACAGCAGGCTCGCCACTGGCTTCTATTCTGAGCCATATCTGATAACGTTTCTAGCCACTGTGTTGCACCATCTCTTGGACCCCAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTACTTTCACACCACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG]




>consensus_6175#2
TTTTTTTTTTTTTTTTTGCTGTCAGAGTTATTTATATTTATTTATTTAAACACATACATA
TTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGAAGAAA
AGGGATGAAAAGATAAGGCGGACTGAAATGTACAGCCGGAAGACTCTTTCAGTTAAGAAA
GTTAGAACCACTCTTTATGAAGAAAGTAAAAGAAGGTTACAGCAGGCTCGCCACTGGCTT
CTATTCTGAGCCATATCTGATAACGTTTCTAGCCACTGTGTTGCACCATCTCTTGGACCC
CAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTACTTTCACACC
ACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG

consensusID : consensus_6175#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 116
fasta sequence

                              [TNCTAGNAGGCNATCCCCGGGACAATAGAAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCA]

[+] EMBL CD127460             [TNCTAGNAGGCNATCCCCGGGACAATAGAAGACTTGAGTCATTCAACAATTCGGCAATCCGCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCA]




>consensus_6175#3
TNCTAGNAGGCNATCCCCGGGACAATAGAAGACTTGAGTCATTCAACAATTCGGCAATCC
GCTTACAGTAAGTGCTGATGAGTGAGATAGTAGAATTAACAGAAGTAATAGTAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6175#1      ------------------------------------------------------------
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      GACTGCAATTGATCAGTCTCTTATTAGCATATGTGCATACTGTGTGTATTGTCTCGATAT 60
consensus_6175#2      ------------------------------------------------------------
                                                                                  

consensus_6175#1      ------------------------ATTCACACACGCTACCTGTATCAAATACCTCCAGTC 36
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      AACCTCAATTCACAAGCATTATAAACAAAGATGAATAAAGCCTAGCAGTGAACGAAACGC 120
consensus_6175#2      ------------------------------------------------------------
                                                                                  

consensus_6175#1      GCCCTTTCGAACACGAAGATAAGAGTCATGGAAGTGGTTGCTTTGGTGTTCTTATTCCCT 96
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      GCGTCATGGATCCCACTGCTAACCAGTATCCATCTTTGCTTATTAATCAGAATACTCTAC 180
consensus_6175#2      TTTTTTTTTTTTTTTTTGCTGTCAG--AGTTATTTATATTTATTTATTTAAACAC---AT 55
                                                                                  

consensus_6175#1      CTGTACGCTCTCAAAATTGTGATCACTCTTCAGGCATGAATAACCATCGATACTCCTGTG 156
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      ATTTAATTGTTTCATTCTGGGTATTAGATCTTATTGATAAATGAATTCAAGATTCAGTGG 240
consensus_6175#2      ACATATTTGTACAAAAGGGCACCAGATACATATGCGCCACACAAAATAATGAAAGTAGGA 115
                                                                                  

consensus_6175#1      ATACAGATAATCTTATTCCTAACAATATTGAAAAACGTTTGGTCGA-AACTCCTTTGAAA 215
consensus_6175#3      -TNCTAGNAGGCN-ATCCCCGG-GACAATAGAAGACTT---------GAGTCATTCAACA 48
consensus_6175#0      GACAAAATAATAATGAACCATGAAGTGATAAATGACATTGGTTCTTTGTATTACTAAATT 300
consensus_6175#2      AGAAAAGGGATGAAAAGATAAGGCGGACTGAAATGTAC-AGCCGGAAGACTCTTTCAGTT 174
                                                  *  *                  *   *     

consensus_6175#1      GTTG-A--TAGTAGTTACGAATCCAATAA-TATGA-ATGAGGATGGTAGTAGTTATGACG 270
consensus_6175#3      ATT-----CGGCAATC-CGCTTACAGTAAGTGCTG-ATGAGTGAGATAGTAGAATTAACA 101
consensus_6175#0      ATGATG--GAACATCTTTCATTCCAATGCCGATAATATTTGTAACATATATGATTTAAAG 358
consensus_6175#2      AAGAAAGTTAGAACCACTCTTTATGAAGAAAGTAA-AAGAAGGTTACAGCAGGCTCGCCA 233
                                  *        *              *          *   *        

consensus_6175#1      GAGGAA-ATGGT---GGAGGGACGAGAGGCT-TGTTGGCTGTATCACCGGGTGTTAGTTT 325
consensus_6175#3      GAAGTA-ATAGT---AGCA----------------------------------------- 116
consensus_6175#0      TTCATATATGGT---TACCTCGTGACATGTGGTTTTGAGTTAATTAAATTTCACTAAATC 415
consensus_6175#2      CTGGCTTCTATTCTGAGCCATATCTGATAACGTTTCTAGCC-ACTGTGTTGCACCATCTC 292
                              *  *                                                

consensus_6175#1      AACTAGACGTCGATTCCTTAGAGCTTAAAGAGAATGAATCAGTGGAACAGAATGGTTTAT 385
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      CGTGAACCTCAATTTGTATACAGTATAGACAATTAAAGAACCTACAATTCCATTACGTAA 475
consensus_6175#2      T-TGGACCCCAGCCAGGGAGTCGTGAAGGACCAACAGAAGCTAGTCCTTTTGCAGCTTA- 350
                                                                                  

consensus_6175#1      CAACTGACTCTCAACTTCAAAAGAGTTCACTTGATAA-TAAACAAACAAAGTCAGGTTAT 444
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      CTTTTATCACTTTAATGATATGAAATACAACTGAAAAGTATGCATTATTTGTTTAATCAT 535
consensus_6175#2      -CTTTCACACCACGACATCATGTCATACACTGACCACCTCTCCGCTTTTTCTCAACCAG- 408
                                                                                  

consensus_6175#1      CTCAATGGTGGTTTAGCTTCAAGTCTATTGCGTGGTTT---------------------- 482
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      TTTCATACTGAATATAATAATGATCACTTGATTCAGTATTAAGACAAAATGTACAACGAA 595
consensus_6175#2      ------------------------------------------------------------
                                                                                  

consensus_6175#1      ------------------------------------------------------------
consensus_6175#3      ------------------------------------------------------------
consensus_6175#0      AGCCTAGCGACTAANAGTTCAAGAAATATATTTAGCATAGNTGAAAGCATGAGTCAATTG 655
consensus_6175#2      ------------------------------------------------------------
                                                                                  

consensus_6175#1      ------------------
consensus_6175#3      ------------------
consensus_6175#0      AAGCTAGATCACCAGGGA 673
consensus_6175#2      ------------------