cluster # 618

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Schistosoma mansoni
cluster # 618 cluster # 618 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_618#0 length = 420 sequences # 1

consensus_618#1 length = 156 sequences # 1

consensusID : consensus_618#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGACGAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCATGGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTTAATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTGTTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACTACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATCGATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT]

[+] EMBL CD184381             [TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGACGAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCATGGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTTAATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTGTTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACTACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATCGATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT]




>consensus_618#0
TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGAC
GAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCAT
GGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTT
AATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTG
TTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACT
ACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATC
GATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT

consensusID : consensus_618#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 156
fasta sequence

                              [CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACTACAGAGGTTGAGCATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATCGATGAGTTTGGAAAAAGCGAACTAAGGCGACGCNNNCCNNNCNNNGAG]

[+] EMBL AA917184             [CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACTACAGAGGTTGAGCATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATCGATGAGTTTGGAAAAAGCGAACTAAGGCGACGCNNNCCNNNCNNNGAG]




>consensus_618#1
CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACTACAGAGGTTGAG
CATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATCGATGAGTTTGGA
AAAAGCGAACTAAGGCGACGCNNNCCNNNCNNNGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_618#0      TATTGTTTGGCACTCAAACTAACTTGGGTACTATTCCATCATGTATATGCTCTAAAAGAC 60
consensus_618#1      ------------------------------------------------------------
                                                                                 

consensus_618#0      GAATCTAACAATGTACTTAACGGTTCTTTGGTTGGTATCGGAAAAACTACTAACAGCCAT 120
consensus_618#1      ------------------------------------------------------------
                                                                                 

consensus_618#0      GGCAATTTTTCAATCCTTAAATCCAATTTCTCTACATTGGATTATGTTTTCACATCTGTT 180
consensus_618#1      ------------------------------------------------------------
                                                                                 

consensus_618#0      AATGTAACACCAAAATCAAAGCTTACAACATCAAACGTCACCGTTATTTTCGAAGGTGTG 240
consensus_618#1      ------------------------------------------------------------
                                                                                 

consensus_618#0      TTGACTACCAAACTTTCGAATTCCACTAAGCAGTTGGATAAAATTGTATCAGAGAAAACT 300
consensus_618#1      ------------CTTTCGAATTCCACTAAGCAGTTGGATAAATTGTTGTCAGAAAAAACT 48
                                 ****************************** *  * ***** ******

consensus_618#0      ACAGAGGTTAGACATATAACAACTGGAACAAATACTATCCAAGAGGANGCTGCTGAAATC 360
consensus_618#1      ACAGAGGTTGAGCATATAACAACTGGAACAAATACTATCCAAGAGGAGGCTGCTGAAATC 108
                     *********   *********************************** ************

consensus_618#0      GATGAGTTTGGAACAAGCGAACTANGCGAAAGCTCTATCCATTCAAGTGATTCACATGTT 420
consensus_618#1      GATGAGTTTGGAAAAAGCGAACTAAGGCGACGCNNN-CCNNNCNNNGAG----------- 156
                     ************* ********** *   * **     *       * *