cluster # 6187

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Schistosoma mansoni
cluster # 6187 cluster # 6187 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6187#0 length = 499 sequences # 3

consensus_6187#1 length = 400 sequences # 1

consensusID : consensus_6187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 499
fasta sequence

                              [AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGTTGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTTAAAGAAATGGAAATATAAAAATTTCT]

[+] EMBL CD160004             [AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACCAGTACATGCCGTCNAGTTGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTT                          ]
[-] EMBL CD160215             [ ATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGT                                                                               ]
[-] EMBL CD159987             [                                          TTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGTTGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTTAAAGAAATGGAAATATAAAAATTTCT]




>consensus_6187#0
AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCT
TTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTT
GTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGT
TTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTG
TCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTT
CCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGG
CAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGT
TGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTTAAAGAAA
TGGAAATATAAAAATTTCT

consensusID : consensus_6187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 400
fasta sequence

                              [ACCCAATAGGCAGCAGTCGTGTTTTTCTGGGCTAACTCAATCTCCAAGTCAAACGGAACAAGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCTAAGTTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGTGGTATAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA]

[-] EMBL CD121981             [ACCCAATAGGCAGCAGTCGTGTTTTTCTGGGCTAACTCAATCTCCAAGTCAAACGGAACAAGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCTAAGTTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGTGGTATAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA]




>consensus_6187#1
ACCCAATAGGCAGCAGTCGTGTTTTTCTGGGCTAACTCAATCTCCAAGTCAAACGGAACA
AGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTATCTGT
CGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTC
CTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTCAAGG
CAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCTAAG
TTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGTGGTA
TAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6187#0      AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCT 60
consensus_6187#1      ------------------------------------------------------------
                                                                                  

consensus_6187#0      TTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTT 120
consensus_6187#1      ------------------------------------------------------------
                                                                                  

consensus_6187#0      GTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAG--CAGTCTT 178
consensus_6187#1      --ACCCAATA-GGCAGCAGTCGTGTTTTTCTGGGCT-AACTCAATCTCCAAGTCAAACGG 56
                         **  ***    * ***  *  **  * **  *  *** **** * **   **  *  

consensus_6187#0      GTTTTTCTGGGCTTAGTCAATCTCCAAGT-CAAACAAAACAAGAAATGGCTGATATTTAT 237
consensus_6187#1      AACAAGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTAT 116
                                        **      ***   * **  * * ******************

consensus_6187#0      CTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAAC 297
consensus_6187#1      CTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAAC 176
                      ************************************************************

consensus_6187#0      TTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTT-CACCACTGGCTGCACTAAGTC 356
consensus_6187#1      TTTCCTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTC 236
                      *********************** ************** *********************

consensus_6187#0      AAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTC 416
consensus_6187#1      AAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTC 296
                      ************************************************************

consensus_6187#0      -AAGTTGCTCTTCCTT-TTTAAACA-CTTGTC-CTAGTA-TAATAAAACTTCTTAT--GT 469
consensus_6187#1      TAAGTTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGT 356
                       *************** ******** ****** ****** ***************   **

consensus_6187#0      GGT-TAAAGA-AATGGA-AATA-TAAAAATTTCT---------- 499
consensus_6187#1      GGTATAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA 400
                      *** ****** ****** **** ** *** ****