These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 519 fasta sequence [GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAATTTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAGATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCATTCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAATTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGATAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCACAGTTGAAATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC] [+] EMBL CD129886 [GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAATTTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAGATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCATTCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAATTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGATAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCACAGTTGAAATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC] [+] EMBL CD129875 [GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAATTTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAGATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCATTCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAATTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGATAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCAAAGCTGAAATCATGAGTCAA ] consensusID : consensus_6195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 468 fasta sequence [GAGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAGTAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAATGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTATCCTGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTACAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTTAAGTAAGTGTATTTAAACTAACAAACAAAACAACCTAATTCTAGATTATTCAAATTT] [+] EMBL CD069721 [GAGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAGTAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAATGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTATCCTGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTACAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTTAAGTAAGTGTATTTAAACTAACAAACAAAACAACCTAATT ] [+] EMBL CD069718 [ AGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAGTGATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAATGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTTTCCCGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTACAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATAAAGTGAATTTAAGTAAGTGTATTTAAACTAACAAAGAAAACAAACTAATTCTAGATTATTCAAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6195#0 -GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAA 59 consensus_6195#1 GAGATTTTATTATTTTTCATAGTTG---AAATCATGAGTCAATTGAAGCTAGACCACCAT 57 *** * ****** * * * *** *** * ** * ** * consensus_6195#0 TTTTGAT-CAGTGAACGAAATAGCTCGATTCTACT-ATTGAGTCATA-AGTATTTTAAAT 116 consensus_6195#1 TTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATAC 117 ****** * * ** * * * * * ** ** ** ****** * * consensus_6195#0 GAAGATGAAGAATGATAAGCAATA--GAATCTATAACGAATATTTTATAC-----CATTT 169 consensus_6195#1 GAGTAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTT 177 ** * ** * *** ** ** * * **** ****** ** ***** consensus_6195#0 GGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAAT 229 consensus_6195#1 AAATGTGACTAAATCATACATCATGCTAATCA-AAGATAACTCTAACAAGTATTTGTTAT 236 ** * ** ** ** ** * * ** * ** *** ** ** ** ** consensus_6195#0 TTCGCCGTCATTCT-TGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCA--A 286 consensus_6195#1 CCTGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTA 296 ** * * * * * ** * * ** * *** * ** * *** * * consensus_6195#0 AAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGT---AATAAGTGTTGTTCG 343 consensus_6195#1 AAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACA 356 ** * ** ** ****** *** * *** * ** * *** * ** * consensus_6195#0 TTT-TAGGTTTGATAGAATTCCAATAGTA-AATTTCACATTGGGGTTACTAAGTTAAATG 401 consensus_6195#1 TCTACAGGCTTTAC-----TTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTT 411 * * *** ** * * * **** *** * * * ** **** ** * consensus_6195#0 AATTGATAGGGTATTTGGA-TAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATT 460 consensus_6195#1 AAGTAA--GTGTATTTAAACTAACAAACAAAAC--AACCTAATTCTAGATTATTCAAATT 467 ** * * * ****** * *** ** ** ** * * ** * * *** consensus_6195#0 TCAGTATTTTTCACAGTTGAAATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC 519 consensus_6195#1 T---------------------------------------------------------- 468 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||