cluster # 62

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Schistosoma mansoni
cluster # 62 cluster # 62 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_62#0 length = 433 sequences # 1

consensus_62#1 length = 364 sequences # 1

consensusID : consensus_62#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 433
fasta sequence

                              [GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCACATAGCCTCGTGTTTAGGAATGAGAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCATTAGGTTAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACACCTAAGAAGTTAGTTTATCTAGTCTATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCACAATAAGATGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACATAGGTTGTATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTTAAGGTTTGAGGGAAGATAGA]

[+] EMBL CD128029             [GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCACATAGCCTCGTGTTTAGGAATGAGAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCATTAGGTTAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACACCTAAGAAGTTAGTTTATCTAGTCTATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAGCTACAACGTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCACAATAAGATGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACATAGGTTGTATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTTAAGGTTTGAGGGAAGATAGA]




>consensus_62#0
GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCACATAGCCTCGTGTTTAGGAATGA
GAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCATTAGGT
TAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACACCTAAGAAGTTAGTTTATCTAGTC
TATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAGCTACAAC
GTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCACAATAAGA
TGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACATAGGTTG
TATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTTAAGGTTT
GAGGGAAGATAGA

consensusID : consensus_62#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [ATAGGTAGGTATGACAGTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATACTTATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCTTCTGTATTATACTGATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTTACTAGTCTGAGCCATGTTGGCAGATGCAGACTACTTGGTTGGGGTCCACGTGACTATCGTAACCAATGGTTGGAGACTCTAGGTGACATGGCTCATAATCGATCATAATTGCGCAGGTGTATACACTCTTTGTCTTCCCTTAAACCTTGAGATTAAAATTGCTTCATAACTTTCTTCCTATACTATATC]

[+] EMBL CD127270             [ATAGGTAGGTATGACAGTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATACTTATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCTTCTGTATTATACTGATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTTACTAGTCTGAGCCATGTTGGCAGATGCAGACTACTTGGTTGGGGTCCACGTGACTATCGTAACCAATGGTTGGAGACTCTAGGTGACATGGCTCATAATCGATCATAATTGCGCAGGTGTATACACTCTTTGTCTTCCCTTAAACCTTGAGATTAAAATTGCTTCATAACTTTCTTCCTATACTATATC]




>consensus_62#1
ATAGGTAGGTATGACAGTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATACT
TATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCTT
CTGTATTATACTGATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTTACTAG
TCTGAGCCATGTTGGCAGATGCAGACTACTTGGTTGGGGTCCACGTGACTATCGTAACCA
ATGGTTGGAGACTCTAGGTGACATGGCTCATAATCGATCATAATTGCGCAGGTGTATACA
CTCTTTGTCTTCCCTTAAACCTTGAGATTAAAATTGCTTCATAACTTTCTTCCTATACTA
TATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_62#0      ----GTAGGTATAAAAAGCTCGATCGAACAGTGGCTTTTCA--CATAGCCTCGTGTTTAG 54
consensus_62#1      ATAGGTAGGTATGACA-GTTGAGTCTTATAATCTGTTTTGAGTCATGATCCTTAGTATAC 59
                        ******** * * * *   **  * * *   **** *  ***   *    ** ** 

consensus_62#0      GAATGAGAAAAGGAATTGATAATAAAAAGATCTCAATTTTCGCAACTATCTCAACCAGCA 114
consensus_62#1      TTATTTGATGCATTCTATGAAATATAGATATAAAGAAACTTGTGACTTTCCTCATTATCT 119
                      **  **       *    **** * * **    *   * *  *** **   *  * * 

consensus_62#0      TTAGGTTAACTCTTCACAAAAGTAGGGAAATCAAGTGGAACA-CCTAAGAAGTTAGTTTA 173
consensus_62#1      TCTGTATTATACT----GATTTCTTAAGATTCAATTGATATAGCTTAAAGAGTTATCTTT 175
                    *  *  * *  **     *         * **** **  * * * ***  *****  ** 

consensus_62#0      TCTAGTCTATTTTACCTATCTAGCTATATATTCGAACACATAAACATTGGTGTCAGTCAG 233
consensus_62#1      ACTAGTCTGAGCCATGTTGGCAGATGCAGACT--ACTTGGTTGGGGTCCACGT--GACTA 231
                     *******     *  *    ** *  * * *  *     *     *    **  * *  

consensus_62#0      CTACAACGTAGGACCAGGCACACATATGCATCAGTCCAAGTTGCCATACCTCGTTCGCAC 293
consensus_62#1      TCGTAACCAATGGTTGGAGACTC-TAGGTGACATGGCTCATAATCG-ATCATAATTGCGC 289
                        ***  * *    *  ** * ** *   **   *   *   *  * *    * ** *

consensus_62#0      AATAAGATGAATACCGGATTCATAGAAATAGTTAATTTAGTGGTGGTAGTATATAAAACA 353
consensus_62#1      ----AGGTGTATAC---ACTCTTTGTCTTCCCTTAAACCTTGAGATTAAAAT-TGCTTCA 341
                        ** ** ****   * ** * *   *   * *     **    **  ** *    **

consensus_62#0      TAGGTTGTATATAGGGATATAGTATGGGAAGGAAGAACGTTATGAAGCAATTTTAAACTT 413
consensus_62#1      TAACTTTCTTCCTATACTATATC------------------------------------- 364
                    **  **   *       ****                                       

consensus_62#0      AAGGTTTGAGGGAAGATAGA 433
consensus_62#1      --------------------