cluster # 6209

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Schistosoma mansoni
cluster # 6209 cluster # 6209 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6209#0 length = 898 sequences # 3

consensus_6209#1 length = 381 sequences # 1

consensusID : consensus_6209#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 898
fasta sequence

                              [ATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATGAATAAACACACTCACCTTTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTCACTTTCATCACTATCACAACAGTAACGAAAACAAACTAAACAAAACAAAACCAACACACAAACTCACATTCACCAATTCAACATAACCACACAAACACACAATATGCATTTCATCCCACATCACAACATTACACTACACCACACTACACTACACTTCACTATATCCATCAATATTACACACTTATCTAACACACCATTACCAAACATCTCACAGATACCACACGAATTAAACTGTGTGATGATGCATACAAACATTCACGGTGCATCACCAACTCTTTCAATATACGTCTGCTTCTTACGCCCAGTGACTGTAGTACATCCAGGCGCCTTTGCACAGAGGACGGCACATCACCATCAAGATTCACTAACAACTACCATACATCAATCAAACAACCCAACCATCCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACACACACACAC]

[+] EMBL CD096855             [ATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATGAATAAACACACTCACCTTTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTCACTTTCATCACTATCACAACAGTAACGAAAACAAACTAAACAAAACAAAACCAACACACAAACTCACATTCACCAATTCAACATAACCACACAAACACACAATATGCATTTCATCCCACATCACAACATTACACTACACCACACTACACTACACTTCACTATATCCATCAATATTACACACTTATCTAACACACCATTACCAAACATCTCACAGATACCACACGA                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD134824             [                                                                                                                                                                                                                                                                                                                                             GTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTCACTTTCATCACTATCACAACAGTAACGAAAACAAACTAAACAAAACAAAACCAACACACAAACTCACATTCACCAATTCAACATAACCACACAAACACACAATATGCATTTCATCCCACATCACAACATTACACTACACCACACTACACTACACTTCACTATATCCATCAATATTACAC                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD085155             [                                                                                                                                                                                                                                                                                                                                                                    TTAACATGTATACCGAAAGGTCACTTTCATCACTATCACACCAGTAACGAAAACAAACTAAACAAANCAAAACCAACACACAAACTCACATTCACCAATTCAACATAACCACGCAAACACACAATATGCATTTCATCCCACATCACAACATTACACTACACCACACTACACTACACTTCACTATATCCATCAATATTACACACTTATCTAACACACCATTACCAAACATCTCACAGATACAACACAAATTAAACTGTGTGATGATGCATACAAACATTCACGGTGCATCACCAACTCTTTCAATATACGTCTGCTTCTTACGCCCAGTGACTGTAGTACATCCAGGCGCCTTTGCACAGAGGACGGCACATCACCATCAAGATTCACTAACAACTACCATACATCAATCAAACAACCCAACCATCCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACACACACACAC]




>consensus_6209#0
ATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGA
TGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATGAATAA
ACACACTCACCTTTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTA
GTTCTACTACGACCCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATA
TACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACAC
ACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAA
CATGTATACCGAAAGGTCACTTTCATCACTATCACAACAGTAACGAAAACAAACTAAACA
AAACAAAACCAACACACAAACTCACATTCACCAATTCAACATAACCACACAAACACACAA
TATGCATTTCATCCCACATCACAACATTACACTACACCACACTACACTACACTTCACTAT
ATCCATCAATATTACACACTTATCTAACACACCATTACCAAACATCTCACAGATACCACA
CGAATTAAACTGTGTGATGATGCATACAAACATTCACGGTGCATCACCAACTCTTTCAAT
ATACGTCTGCTTCTTACGCCCAGTGACTGTAGTACATCCAGGCGCCTTTGCACAGAGGAC
GGCACATCACCATCAAGATTCACTAACAACTACCATACATCAATCAAACAACCCAACCAT
CCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACT
CACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACACACACACAC

consensusID : consensus_6209#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [CCCAACCATCCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAAACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTATCAAGAATTACATTAGTGCTAACTCTGATTTTCCCTGCACTG]

[-] EMBL CD085303             [CCCAACCATCCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAAACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTATCAAGAATTACATTAGTGCTAACTCTGATTTTCCCTGCACTG]




>consensus_6209#1
CCCAACCATCCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCAC
TCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAA
ACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCA
TCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATC
TTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCAC
CTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTATCAAGAATTACATTAGTGCTA
ACTCTGATTTTCCCTGCACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6209#0      ATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGA 60
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      TGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATGAATAA 120
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      ACACACTCACCTTTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTA 180
consensus_6209#1      -----CCCAACCATCCATC-TACCCATCTATCAAACGACCAACACT-TCTTACACACACC 53
                           * ** *  * *  *  ** **   * ** **  ** *  ** *  **  **    

consensus_6209#0      GTTCTACTACGACCCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATA 240
consensus_6209#1      CATTCACT-CACTCACTCACTCACTTCAAA--TAACTAACCTCAAATCA-CAAACACTTC 109
                        *  *** *   *   ***  **  ***    *** ***** **** * ******  * 

consensus_6209#0      T-ACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACA 299
consensus_6209#1      TTACACACAAAACAAATACATTCGT--ATCACTACAACTACAATTTACAATCCTACTACA 167
                      * *** * * **  ** *  *   *  **** **  * **  ***   * * **  ****

consensus_6209#0      CACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTA 359
consensus_6209#1      TCCATTCAATT----CATCACATCACTGTCAGAAGAC----AAAACTAATAGTCA---TC 216
                        **  **        ** ******   ****  *      * ** ***  * **   * 

consensus_6209#0      ACATGTATACCGAAAGGTCACTTTCATCACTATCACAACAGTAACGAAA-ACAAACTAAA 418
consensus_6209#1      AAGTTAATAAC-AGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAAT 275
                      *  *  *** * * * *** ** ** * * *    ** **   **  *  *  ****** 

consensus_6209#0      CAAAACAAAACCAACACACAAACTCACATTCACCAATTCAACATAACCACACAAACACAC 478
consensus_6209#1      CATAATA--ATCAATAAACA------CACTCACCTCTTCGCCACACTCA-AAAACCACAC 326
                      ** ** *  * *** * ***      ** *****  ***  ** *  ** * ** *****

consensus_6209#0      AATATGCATTTCATCCCACATCACAACATTACACTACACCACACTACACTACACTTCACT 538
consensus_6209#1      ATCCTATGCTGTATCAAGAATTACATTAGTGC-TAACTCTGATTTTCCCTGCACTG---- 381
                      *   *    *  ***    ** ***  * * *   ** *     * * ** ****     

consensus_6209#0      ATATCCATCAATATTACACACTTATCTAACACACCATTACCAAACATCTCACAGATACCA 598
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      CACGAATTAAACTGTGTGATGATGCATACAAACATTCACGGTGCATCACCAACTCTTTCA 658
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      ATATACGTCTGCTTCTTACGCCCAGTGACTGTAGTACATCCAGGCGCCTTTGCACAGAGG 718
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      ACGGCACATCACCATCAAGATTCACTAACAACTACCATACATCAATCAAACAACCCAACC 778
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      ATCCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCA 838
consensus_6209#1      ------------------------------------------------------------
                                                                                  

consensus_6209#0      CTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACACACACACAC 898
consensus_6209#1      ------------------------------------------------------------