cluster # 6210

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Schistosoma mansoni
cluster # 6210 cluster # 6210 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6210#0 length = 514 sequences # 1

consensus_6210#1 length = 325 sequences # 2
consensus_6210#2 length = 265 sequences # 1

consensusID : consensus_6210#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAGTGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAAAAGCATTTTGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAAGAGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAATTCCATAAGATTATCTAGGTGATTAGTGAATTGTTAACAGATGGATTTTATAAAATTTGTTTGGAAACACTGTGAGTTGGAACCAACTAGTAGAACGAGACAACGAGCAAATTACGCCATTAATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACATCTTATGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAATATTTATTTCGATNCAGGATCGAAATCTTTGTCCAGACG]

[+] EMBL CD149073             [ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAGTGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAAAAGCATTTTGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAAGAGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAATTCCATAAGATTATCTAGGTGATTAGTGAATTGTTAACAGATGGATTTTATAAAATTTGTTTGGAAACACTGTGAGTTGGAACCAACTAGTAGAACGAGACAACGAGCAAATTACGCCATTAATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACATCTTATGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAATATTTATTTCGATNCAGGATCGAAATCTTTGTCCAGACG]




>consensus_6210#0
ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAG
TGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAA
AAGCATTTTGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAAG
AGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAATT
CCATAAGATTATCTAGGTGATTAGTGAATTGTTAACAGATGGATTTTATAAAATTTGTTT
GGAAACACTGTGAGTTGGAACCAACTAGTAGAACGAGACAACGAGCAAATTACGCCATTA
ATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACATCTTA
TGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAATATTT
ATTTCGATNCAGGATCGAAATCTTTGTCCAGACG

consensusID : consensus_6210#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 325
fasta sequence

                              [CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCAAATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACATAGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAGTGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATATGTTCTGGATGTCACAATCGCAATCC]

[+] EMBL CD117208             [CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCAAATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACATAGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAGTGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATATGTTCTGGATGTCACAATCGCAATCC]
[+] EMBL CD117222             [CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCAAATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACATAGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAGTGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATATGTTCTGGATGTCACAATCGCAATCC]




>consensus_6210#1
CCTGAACCTCAGTGATCCCCAATGTTCTTTCACTGTGTTCCGTAGTTGTTGAACTATTCA
AATCGTTGACATCCGACTTCTTCTAAATGATATAATTAGAAGAATTGATTACTAAACATC
AAATATCATTCTTTTAATTCATCGTTCTCAGTAATGATGACACAAGAGATTCTCATACAT
AGTTGCTGAATTCCAATTCGTCAAATCATTCAGGATATCTATCAGCGATTTGACAATCAG
TGTGCTCAGTAAACACGATCCTACACCTAGTTGACGACCCCTTTGTGTGATGGAATATAT
GTTCTGGATGTCACAATCGCAATCC

consensusID : consensus_6210#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 265
fasta sequence

                              [CTCATGTCTGTCTCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCTTCGAGCCTTCAGGATTCCATGTGAGGGCTTGTCTGTGTGACTCATGTTGGGTGATTTCCGTCAATGTGTGTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCGCATGGAATCTGGTTTGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACA]

[+] EMBL CD166865             [CTCATGTCTGTCTCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCTTCGAGCCTTCAGGATTCCATGTGAGGGCTTGTCTGTGTGACTCATGTTGGGTGATTTCCGTCAATGTGTGTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCGCATGGAATCTGGTTTGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACA]




>consensus_6210#2
CTCATGTCTGTCTCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCTTCG
AGCCTTCAGGATTCCATGTGAGGGCTTGTCTGTGTGACTCATGTTGGGTGATTTCCGTCA
ATGTGTGTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCGCATGGAATCTGG
TTTGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATC
TTGCGTAGACAACTGTTAATAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6210#0      ATGTAATCAAACCAATATACTGTTTTTTCAAATTCTATATTCCCGAAGTTAATCAATGAG 60
consensus_6210#1      -----------------------------------------CCTGAACCTCAGTGAT--- 16
consensus_6210#2      ------------------------------------------------CTCATGTCTGTC 12
                                                                       * *    *   

consensus_6210#0      TGAGCACCCCTGTGTGTATTTTATTCACAGTGAAAAACATTTTTTTGGTTAGACCAAAAA 120
consensus_6210#1      ------CCCCAATGT-----TCTTTCACTGTGTTCCGTAGTT-----GTTGAACTATTCA 60
consensus_6210#2      TCCATTTCTCAGTGTAATGTGTTCTGTCAATCTTCCTCTTCTCCT---TCGAGCCTTCAG 69
                             * *  ***         *  *  *          *      *    *      

consensus_6210#0      AAGCATTT-TGGTAGATGATTTGTATTTAGTGATGACAAATTTAACTGTCAGGAGCTAAA 179
consensus_6210#1      AATCGT---TGACATCCGACTTCTTCTAAATGATA-------TAATTAGAAGAATT---- 106
consensus_6210#2      GATTCCATGTGAGGGCTTGTCTGTG-TGACTCATGTTGGG--TGATTTCCGTCAATGTGT 126
                       *       **          * *  * * * **        * * *      *      

consensus_6210#0      GAGTACTAAAGTGACAATATTTTCGTCTAAATCCTACTTTCGGCGTCGTATATCATCAAT 239
consensus_6210#1      GATTACTAAACATCAAATATCATTCTTTTAATTCATCGTTC----TCAGTAATGATGA-- 160
consensus_6210#2      GTTCTATCCACTTCCAGCGCTTCTCCCTGATTTCTCTCTCCG----CATGGAATCTGGTT 182
                      *     *  *     *           * * * *    * *     *    *   *    

consensus_6210#0      TCCATAAGATTATC-TAGGTGATTAGTGA--ATTGTTAACAGATGGATTTTATAAAATTT 296
consensus_6210#1      CACAAGAGATTCTCATACATAGTTGCTGA--ATTCCAATTCGTCAAATCATTCAGGATAT 218
consensus_6210#2      TGTTGTCTCCTACAGTGGGTTGCTGCTGATAGTGTCTGGCCATCGGATC-CGAAGTATCT 241
                                *    *   *   *  ***   *             **     *  ** *

consensus_6210#0      GTTTGGAAACACTGTGAGTTGGAACCAACTAGTAGA-ACGAGACAACGAGCAAATTACGC 355
consensus_6210#1      CTATCAGCGATTTGACAATCAGTGT-GCTCAGTAAACACGATCCTACACCTAGTTGACGA 277
consensus_6210#2      TGCGTAGACAACTGTTAATAAACA------------------------------------ 265
                                  **  * *                                         

consensus_6210#0      CATTAATTGACTGAAGCTGAAAACTATGCATTCACTGACTAAATGGTACTGTAGACCACA 415
consensus_6210#1      C-CCCTTTGTGTGA---TGGAATATATGTTCTGGATGTCACAATCGCAATCC-------- 325
consensus_6210#2      ------------------------------------------------------------
                                                                                  

consensus_6210#0      TCTTATGAGGTTTTGGCTAAGGACCTGTACTANATGAAGGAATTGGAAATTGGAAATAAA 475
consensus_6210#1      ------------------------------------------------------------
consensus_6210#2      ------------------------------------------------------------
                                                                                  

consensus_6210#0      TATTTATTTCGATNCAGGATCGAAATCTTTGTCCAGACG 514
consensus_6210#1      ---------------------------------------
consensus_6210#2      ---------------------------------------