These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AGAGGGGTGTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCATAGGCACTTGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCAGCTGCTGCGTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGAAATTGTGAGCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCACTGTCTGTCGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGAATTTCACAAAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCTATGTCGATTAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGACTAAAGTATTCACTTAATTCTTCATTA] [+] EMBL CD126625 [AGAGGGGTGTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCATAGGCACTTGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCAGCTGCTGCGTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGAAATTGTGAGCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCACTGTCTGTCGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGAATTTCACAAAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCTATGTCGATTAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGACTAAAGTATTCACTTAATTCTTCATTA] consensusID : consensus_6212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 387 fasta sequence [TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGGGGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTGGTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAGCAGCTGCTGCGGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTGGACCACGACTAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCACGTCTTTTGGCACAGCCTTTTTAGCTTCATCCAATTTAATAT] [+] EMBL AI395013 [TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGGGGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTACGTAAGCATAGGCACTTGGTTGACGTGCTGTAACCGGTCATGTTGCTGTTAATGTATATGAAGCAGCTGCTGCGGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTGGACCACGACTAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCACGTCTTTTGGCACAGCCTTTTTAGCTTCATCCAATTTAATAT] [-] EMBL CD063889 [ GAGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTGGTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAcc ] [-] EMBL CD166315 [ AGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTGGTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAGCAGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6212#0 ------------------------------------------------------------ consensus_6212#1 TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGG 60 consensus_6212#0 ---------------------------------------------------AGAGGGGT- 8 consensus_6212#1 GGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTT 120 ******** consensus_6212#0 GTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCATAGGCACT 68 consensus_6212#1 GTGATAAA-GGACACTCACC-TGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACT 178 ******** *********** ******* ****************** ************ consensus_6212#0 TGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCAGCTGCTGC 128 consensus_6212#1 TG-GTTGACGTGCTGTAATCGGAG-ATGTTGC-TGTTAATGTATATGAAGCAGCTGCTGC 235 ** ********************* ******* ******** ***************** consensus_6212#0 GTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGAAATTGTGA 188 consensus_6212#1 G-GCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTG-GA 293 * ****************************************** ************ ** consensus_6212#0 GCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCACTGTCTGT 248 consensus_6212#1 CCACGACTAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCAC-GTCTTT 352 ***** ***** ** *** ******* ************* *********** **** * consensus_6212#0 CGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGAATTTCACA 308 consensus_6212#1 TGGCACAGCCTTTTTAGCTTCATCCAATTTAATAT------------------------- 387 ** ****** *** ******* *** **** ** consensus_6212#0 AAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCTATGTCGAT 368 consensus_6212#1 ------------------------------------------------------------ consensus_6212#0 TAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGACTAAAGTAT 428 consensus_6212#1 ------------------------------------------------------------ consensus_6212#0 TCACTTAATTCTTCATTA 446 consensus_6212#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||