cluster # 6212

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Schistosoma mansoni
cluster # 6212 cluster # 6212 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6212#0 length = 446 sequences # 1

consensus_6212#1 length = 387 sequences # 3

consensusID : consensus_6212#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [AGAGGGGTGTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCATAGGCACTTGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCAGCTGCTGCGTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGAAATTGTGAGCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCACTGTCTGTCGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGAATTTCACAAAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCTATGTCGATTAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGACTAAAGTATTCACTTAATTCTTCATTA]

[+] EMBL CD126625             [AGAGGGGTGTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCATAGGCACTTGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCAGCTGCTGCGTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGAAATTGTGAGCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCACTGTCTGTCGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGAATTTCACAAAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCTATGTCGATTAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGACTAAAGTATTCACTTAATTCTTCATTA]




>consensus_6212#0
AGAGGGGTGTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCA
TAGGCACTTGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCA
GCTGCTGCGTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGA
AATTGTGAGCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCA
CTGTCTGTCGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGA
ATTTCACAAAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCT
ATGTCGATTAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGAC
TAAAGTATTCACTTAATTCTTCATTA

consensusID : consensus_6212#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 387
fasta sequence

                              [TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGGGGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTGGTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAGCAGCTGCTGCGGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTGGACCACGACTAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCACGTCTTTTGGCACAGCCTTTTTAGCTTCATCCAATTTAATAT]

[+] EMBL AI395013             [TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGGGGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTACGTAAGCATAGGCACTTGGTTGACGTGCTGTAACCGGTCATGTTGCTGTTAATGTATATGAAGCAGCTGCTGCGGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTGGACCACGACTAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCACGTCTTTTGGCACAGCCTTTTTAGCTTCATCCAATTTAATAT]
[-] EMBL CD063889             [                                                                                                                GAGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTGGTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAcc                                                                                                                                                                 ]
[-] EMBL CD166315             [                                                                                                                 AGGGGTTGTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTGGTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAGCAGCTG                                                                                                                                                            ]




>consensus_6212#1
TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGG
GGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTT
GTGATAAAGGACACTCACCTGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACTTG
GTTGACGTGCTGTAATCGGAGATGTTGCTGTTAATGTATATGAAGCAGCTGCTGCGGCTG
CAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTGGACCACGAC
TAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCACGTCTTTTGGCACAG
CCTTTTTAGCTTCATCCAATTTAATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6212#0      ------------------------------------------------------------
consensus_6212#1      TTTTTCACTGAGTTATTAATATAATTTACTTTTTATTTTAATTTTATTTTTAGGTCATGG 60
                                                                                  

consensus_6212#0      ---------------------------------------------------AGAGGGGT- 8
consensus_6212#1      GGATTACATTAGCATATGGAGGAAGACTAGCAGTTGGCGGTAAGAAGACTGAGAGGGGTT 120
                                                                         ******** 

consensus_6212#0      GTGATAAATGGACACTCACCCTGGAGATCGATAATAACCAGGTAAGTCAGCATAGGCACT 68
consensus_6212#1      GTGATAAA-GGACACTCACC-TGGAGATAGATAATAACCAGGTAAGTAAGCATAGGCACT 178
                      ******** *********** ******* ****************** ************

consensus_6212#0      TGTGTTGACGTGCTGTAATCGGAGCATGTTGCGTGTTAATGCGTATGAAGCAGCTGCTGC 128
consensus_6212#1      TG-GTTGACGTGCTGTAATCGGAG-ATGTTGC-TGTTAATGTATATGAAGCAGCTGCTGC 235
                      ** ********************* ******* ********  *****************

consensus_6212#0      GTGCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGAAAATGTGAAATTGTGA 188
consensus_6212#1      G-GCTGCAGCTGCCGCCGCAGCTCCATTCAACTGAGCAGGAAGACAATGTGAAATTG-GA 293
                      * ****************************************** ************ **

consensus_6212#0      GCACGAATAAATGGATGTCGTTGCTTACTCAAGGAGTTATTGGTACTCATCACTGTCTGT 248
consensus_6212#1      CCACGACTAAATTGACGTCCTTGCTTAATCAAGGAGTTATTTGTACTCATCAC-GTCTTT 352
                       ***** ***** ** *** ******* ************* *********** **** *

consensus_6212#0      CGGAACAGCCGTTTAAGCTTCAACCATTTTATCATGCAAATCGTGAAAATGAATTTCACA 308
consensus_6212#1      TGGCACAGCCTTTTTAGCTTCATCCAATTTAATAT------------------------- 387
                       ** ****** *** ******* *** ****  **                         

consensus_6212#0      AAGTTCTTCAGCTGATCTCTTCTGATTCAGAAGTAACAAATCCAAAACCTCTATGTCGAT 368
consensus_6212#1      ------------------------------------------------------------
                                                                                  

consensus_6212#0      TAGTTGACTTGTCCATCATTAATTCGACATGATTCTAGCTTTCCAAATTGACTAAAGTAT 428
consensus_6212#1      ------------------------------------------------------------
                                                                                  

consensus_6212#0      TCACTTAATTCTTCATTA 446
consensus_6212#1      ------------------