cluster # 6213

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Schistosoma mansoni
cluster # 6213 cluster # 6213 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6213#0 length = 556 sequences # 3

consensus_6213#1 length = 504 sequences # 1

consensusID : consensus_6213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 556
fasta sequence

                              [ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTCCCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTTTGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG]

[-] EMBL CD178521             [ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTCCCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTTTGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATAg                                                                                                    ]
[+] EMBL CD161353             [                                                                                                                                      ATGGAAACCAAGCCAAATCAGCGTAGGAATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACCTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG]
[+] EMBL CD161021             [                                                                                                                                      ATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCGATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCG]




>consensus_6213#0
ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTC
CCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTT
TGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCG
ATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGG
AGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA
CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT
TACAGTCTGTATTGGTCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGG
AGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAA
GGTTGCTCGAGTCGAATCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGA
TCGCAGTTCATCATCG

consensusID : consensus_6213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 504
fasta sequence

                              [TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACACTGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATCACCCACTCAACCTTTCAGTTTTGA]

[+] EMBL CD188772             [TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGGAGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGACACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAATTACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTACGGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATTCGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACACTGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAGCTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATCACCCACTCAACCTTTCAGTTTTGA]




>consensus_6213#1
TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGG
AGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA
CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT
TACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTAC
GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT
CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACAC
TGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAG
CTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATC
ACCCACTCAACCTTTCAGTTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6213#0      ATCGAGAATGACAGACACCAAACCAATGATGACATACAAAAAGGATTTTATAAGATTTTC 60
consensus_6213#1      ------------------------------------------------------------
                                                                                  

consensus_6213#0      CCTGAGGATTCCCTTCGTGTTTTGAAACGTTTTTTGTTTGTTGGGCGGTTCACGACTTTT 120
consensus_6213#1      ------------------------------------------------------------
                                                                                  

consensus_6213#0      TGTTGGTGTTAACGATGGAAACCAAGCCAAATCAGCGTAGGGATCATTTATTCCTGGTCG 180
consensus_6213#1      ------------------------------------------------------------
                                                                                  

consensus_6213#0      ATCTGGATGTATAGAACGTCGACGGTAACTCGGAAGTCGAGAAACACATTCTAGTATGGG 240
consensus_6213#1      TCGTGGATGTATAGAACGTCGACGGTAATTCGGAAGTCGAGAAACACATTCTAGTATGGG 60
                         ************************* *******************************

consensus_6213#0      AGATGAGTGGTTTTGTACTGGTAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA 300
consensus_6213#1      AGATGAGTGGTTTTGTACTGGCAGCCCATTCATAAAACTTGCAGATAGTTCTTTAGTAGA 120
                      ********************* **************************************

consensus_6213#0      CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT 360
consensus_6213#1      CACAGGTTTCTGCAGTAATGTCGTCTCATATTTCGGTGATTCATGACCATTTTCGGAAAT 180
                      ************************************************************

consensus_6213#0      TACAGTCTGTATTGGTCTA------------------------------TCTTCTGTTAC 390
consensus_6213#1      TACAGTCTGTATTGGTCTACAGAAGTAAGCTTTCACACTTAGTTACCTATCTTCTGTTAC 240
                      *******************                              ***********

consensus_6213#0      GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT 450
consensus_6213#1      GGTGGCAGGATTACCTACGACGTTTTGTGGAGAATCCTTTAATAAACTCTCAGAACCATT 300
                      ************************************************************

consensus_6213#0      CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCT----------- 499
consensus_6213#1      CGATATGCATTTTTTCAGCTTAGCGATCAAGGTTGCTCGAGTCGAATCTAGTTTTTACAC 360
                      *************************************************           

consensus_6213#0      -----------------------GTCACTGGAGGAACAACATCTAGATATCTAGACAAAG 536
consensus_6213#1      TGATTTAAGCCAAAGATTTACCTGTCACTGGAGGAACAACATCTAGATATCTAGACAAAG 420
                                             *************************************

consensus_6213#0      CTGATCGCAGTTCATCATCG---------------------------------------- 556
consensus_6213#1      CTGATCGCAGTTCATCATCGCTGATAGTTTCCATCCCAGCGCTGATGAGCAACAGCAATC 480
                      ********************                                        

consensus_6213#0      ------------------------
consensus_6213#1      ACCCACTCAACCTTTCAGTTTTGA 504