These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6218#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 699 fasta sequence [TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTACAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAATGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACTCCCATTGATACAACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGATATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGATGATGTCAATCGAAAACTTAACTTTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGTCCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTCCATGTGTCCATTCTACAAGACTTCAACACAACTCAGATCAAGAACACGAGATTAGCCTCACTAGAACGTCGATATATTTCAATACACCCAAAGTCTGACGCAATCCAACAAGAATAGTTATCAGGATAGGTAAATATATAACACATATGACACCTGTCACACTATCCACATTTCTGACTCAGTAAAACAACCGATCATTATCATTCTCACCTGCACATAAATAACANACAACACACCCCACACTGATATTAAGTATTCGTTTAGCATGAAAATTCAAGA] [+] EMBL CD147114 [TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTACAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAATGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACTCCCATTGATACAACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGATATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGATGATGTCAATCGAAAACTTAACTTTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGTCCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTCCATGTGTCCATTCTACAAGACTTCAACACAACTCAGATCAAGAACACGAGATTAGCCTCACTAGAACGTCGATAT ] [+] EMBL CD156985 [ AACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGATATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGACGATGTCAATCGAAAACATAACTGTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTTTTATAATAGTCCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTCCAAGTGTATATTCTACAAGACTTCAACACAACTCAGATCAATAACACGAGATTAGCCTCACTGGAACGTCAACATATTTCAATACACCCAAAGTCTGACGCAATCCAACAAGAATAGTTATCAGGATAGGTAAATATATAACACATATGACACCTGTCACACTATCCACATTTCTGACTCAGTAAAACAACCGATCATTATCATTCTCACCTGCACATAAATAACANACAACACACCCCACACTGATATTAAGTATTCGTTTAGCATGAAAATTCAAGA] consensusID : consensus_6218#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [CACACACCCAAAGTCTGATGCAATTCAACAACAATAATAATCAGGATAGGTATATATATAACACATATGACACCTGTCACACGATCCACATTTCTGACTCAGTAGAACAACCAATCATTATCATTCTCACCCGTACATAAATAACAAACAACACACCCCACACTGATATTAAGTGTTCGTTTAACATGAAAATTCAAGAATACAATTTTCTCTTACTTGAGACTAGTAGGATGAATAGATCTCGATCATAATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGATTCAAGTCAACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGCGAGTTGAGCTGATGAATCACGAGCCAAAACAAATGAGAAATGCATGAATCTCAAAATATCAGATATATCATAACTTAGTTAACAGATCTCATGTGGTAACAAAGGTCCATCGCATTTGGTCCTGAGTACTGTACATCAGGAATCTCANACCCTTAATTATTAC-AATTCANATGTTGTAATCCTGTACTATGTAAAAGTTTGTTATTTCTTCAACTTCTCTAATTCTATACAGCGCATGTTAAATTCGATTTTCCGAATTTGGAAGCACCTATTATAGAAAAAGCTGAACGCTATGAAAGTAAGTCAAAATAATGAATTACACGCAGTTTA] [+] EMBL CD154434 [CACACACCCAAAGTCTGATGCAATTCAACAACAATAATAATCAGGATAGGTATATATATAACACATATGACACCTGTCACACGATCCACATTTCTGACTCAGTAGAACAACCAATCATTATCATTCTCACCCGTACATAAATAACAAACAACACACCCCACACTGATATTAAGTGTTCGTTTAACATGAAAATTCAAGAATACAATTTTCTCTTACTTGAGACTAGTAGGATGAATAGATCTCGATCATAATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGATTCAAGTCAACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGCGAGTTGAGCTGATGAATCACGAGCCAAAACAAATGAGAAATGCATGAATCTCAAAATATCAGATATATCATAACTTAGTTAACAGATCTCATGTGGTAACAAAGGTCCATCGCATTTGGTCCTGAGTACTGTACATCAGGAATCTCANACCCTTAATTATTAC AATTCANATGTTGTAATCCTGTACTATG ] [-] EMBL CD124136 [ ATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGACTCAAATCAACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGTGAGTTGAGCTGATGAATCACGAGCCAAGACAAATGAGAGTTACATGAATCTCAAGATATCAGATATATCATAACCAAATTAACAGATCTCATGTGGTAGCAAAGGTCCATCGCATTCGGTCCTGAGCACTGTCCATGAGGAATCTCAAACCCTT ATTATTACAAATTCAAATGTTGTAATCCTGTACTATGTAAAAGTTTGTTATTTCTTCAACTTCTCTAATTCTATACAGCGCATGTTAAATTCGATTTTCCGAATTTGGAAGCACCTATTATAGAAAAAGCTGAACGCTATGAAAGTAAGTCAAAATAATGAATTACACGCAGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6218#0 TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTA 60 consensus_6218#1 --------------CACACACCCAAAGTCTGATGCA-ATTCAACAACAATA--ATAATCA 43 ** *** *** * ** * ****** * * * * * consensus_6218#0 CAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAA 120 consensus_6218#1 GGATAGGTATATATATAA-CACATATGACACCTGTCACACGATCCACATTTCTGACTCAG 102 * * * * * *** * * * * * * * ** ***** * ** consensus_6218#0 TGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACT 180 consensus_6218#1 TAGAACAACCAATC-ATTATCATTCTCACCCGTACA---TAAATAACAAACAACACACCC 158 * * ** * ** *** * ** * ** * * * * consensus_6218#0 CCCATTGATACAACTTCGAAAGTTC-CTCAAAATGAACGATTTTGTGAATTAAACTTTGA 239 consensus_6218#1 CACACTGATA-----TTAAGTGTTCGTTTAACATGAA--AATTCAAGAATACAATTTTCT 211 * ** ***** * * **** * ** ***** * ** **** ** *** consensus_6218#0 TATATTTAGTGGTAGT-GTTTCAACAATGATCGGT--TGATGATGTCAATCG----AAAA 292 consensus_6218#1 CTTACTTGAGACTAGTAGGATGAATAGATCTCGATCATAATGGAATTGTTCACGCTGAGG 271 ** ** **** * * ** * *** * * *** * ** * consensus_6218#0 CTTAACTTTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGT 352 consensus_6218#1 CTCGAAACCACCAATC--CCGGATTCAAGTCAACACTTTGAAAGGAATCATATTGAAGTT 329 ** * ** * **** * *** * ** * * * * * * consensus_6218#0 CCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCT--TAGACGAACATCTACACT 410 consensus_6218#1 TCTTTGAGGAAATCAGCCCTGAGAGAAAGCGAGTTGAGCTGATGAATCACGAGCCAAAAC 389 **** * * * * ** * * * ** * ** * * * * * * * consensus_6218#0 AGATTCCT--TCCATGTGTC-CATTCTACAAGACTTCAACACAACTCAGATCAAGAACAC 467 consensus_6218#1 AAATGAGAAATGCATGAATCTCAAAATATCAGA-TATATCATAACTTAG-TTAACAGATC 447 * ** * **** ** ** ** *** * * ** **** ** * ** * * consensus_6218#0 GAGATTAGCCTCACTAGAACGTCG-ATATATTTCAATACACCCAAAGTCTGA---CGCAA 523 consensus_6218#1 TCATGTGGTAACAAAGGTCCATCGCATTTGGTCCTGAGTACTGTACATCAGGAATCTCAN 507 * * ** * * *** ** * * * ** * ** * * ** consensus_6218#0 TCCAACAAGAATAGTTATCAGGATAG-GTAAATATATAACACATATGACACCTGTCACAC 582 consensus_6218#1 ACCCTTAATTATTACAATTCANATGTTGTAATCCTGTACTATGTA-AAAGTTTGTTATTT 566 ** ** ** ** ** **** * ** * ** * *** * consensus_6218#0 TATCCACATTTCTGACTCAGTAAAACAACCGATCATTATCATTCTC---ACCTGCACATA 639 consensus_6218#1 CTTCAACTTCTCTAATTCTATACAGCGCATGTTAAATTCGATTTTCCGAATTTGGAAGCA 626 ** ** * *** * ** ** * * * * * * *** ** * ** * * consensus_6218#0 AATAACANACAACACACCCCACACT--GATATTAAGT---ATTCGTTTAGCATGAAAATT 694 consensus_6218#1 CCTATTATAGAAAAAGCTGAACGCTATGAAAGTAAGTCAAAATAATGAATTACACGCAGT 686 ** * * ** * * ** ** ** * ***** * * * * * * * consensus_6218#0 CAAGA 699 consensus_6218#1 TTA-- 689 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||