cluster # 6218

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Schistosoma mansoni
cluster # 6218 cluster # 6218 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6218#0 length = 699 sequences # 2

consensus_6218#1 length = 689 sequences # 2

consensusID : consensus_6218#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 699
fasta sequence

                              [TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTACAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAATGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACTCCCATTGATACAACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGATATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGATGATGTCAATCGAAAACTTAACTTTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGTCCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTCCATGTGTCCATTCTACAAGACTTCAACACAACTCAGATCAAGAACACGAGATTAGCCTCACTAGAACGTCGATATATTTCAATACACCCAAAGTCTGACGCAATCCAACAAGAATAGTTATCAGGATAGGTAAATATATAACACATATGACACCTGTCACACTATCCACATTTCTGACTCAGTAAAACAACCGATCATTATCATTCTCACCTGCACATAAATAACANACAACACACCCCACACTGATATTAAGTATTCGTTTAGCATGAAAATTCAAGA]

[+] EMBL CD147114             [TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTACAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAATGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACTCCCATTGATACAACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGATATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGATGATGTCAATCGAAAACTTAACTTTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGTCCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTCCATGTGTCCATTCTACAAGACTTCAACACAACTCAGATCAAGAACACGAGATTAGCCTCACTAGAACGTCGATAT                                                                                                                                                                                                            ]
[+] EMBL CD156985             [                                                                                                                                                                                               AACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGATATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGACGATGTCAATCGAAAACATAACTGTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTTTTATAATAGTCCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTCCAAGTGTATATTCTACAAGACTTCAACACAACTCAGATCAATAACACGAGATTAGCCTCACTGGAACGTCAACATATTTCAATACACCCAAAGTCTGACGCAATCCAACAAGAATAGTTATCAGGATAGGTAAATATATAACACATATGACACCTGTCACACTATCCACATTTCTGACTCAGTAAAACAACCGATCATTATCATTCTCACCTGCACATAAATAACANACAACACACCCCACACTGATATTAAGTATTCGTTTAGCATGAAAATTCAAGA]




>consensus_6218#0
TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTA
CAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAA
TGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACT
CCCATTGATACAACTTCGAAAGTTCCTCAAAATGAACGATTTTGTGAATTAAACTTTGAT
ATATTTAGTGGTAGTGTTTCAACAATGATCGGTTGATGATGTCAATCGAAAACTTAACTT
TTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGTCCTTTCAA
CTTTTACACGCATGTAGGACGGTAATTTACCTTAGACGAACATCTACACTAGATTCCTTC
CATGTGTCCATTCTACAAGACTTCAACACAACTCAGATCAAGAACACGAGATTAGCCTCA
CTAGAACGTCGATATATTTCAATACACCCAAAGTCTGACGCAATCCAACAAGAATAGTTA
TCAGGATAGGTAAATATATAACACATATGACACCTGTCACACTATCCACATTTCTGACTC
AGTAAAACAACCGATCATTATCATTCTCACCTGCACATAAATAACANACAACACACCCCA
CACTGATATTAAGTATTCGTTTAGCATGAAAATTCAAGA

consensusID : consensus_6218#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 689
fasta sequence

                              [CACACACCCAAAGTCTGATGCAATTCAACAACAATAATAATCAGGATAGGTATATATATAACACATATGACACCTGTCACACGATCCACATTTCTGACTCAGTAGAACAACCAATCATTATCATTCTCACCCGTACATAAATAACAAACAACACACCCCACACTGATATTAAGTGTTCGTTTAACATGAAAATTCAAGAATACAATTTTCTCTTACTTGAGACTAGTAGGATGAATAGATCTCGATCATAATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGATTCAAGTCAACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGCGAGTTGAGCTGATGAATCACGAGCCAAAACAAATGAGAAATGCATGAATCTCAAAATATCAGATATATCATAACTTAGTTAACAGATCTCATGTGGTAACAAAGGTCCATCGCATTTGGTCCTGAGTACTGTACATCAGGAATCTCANACCCTTAATTATTAC-AATTCANATGTTGTAATCCTGTACTATGTAAAAGTTTGTTATTTCTTCAACTTCTCTAATTCTATACAGCGCATGTTAAATTCGATTTTCCGAATTTGGAAGCACCTATTATAGAAAAAGCTGAACGCTATGAAAGTAAGTCAAAATAATGAATTACACGCAGTTTA]

[+] EMBL CD154434             [CACACACCCAAAGTCTGATGCAATTCAACAACAATAATAATCAGGATAGGTATATATATAACACATATGACACCTGTCACACGATCCACATTTCTGACTCAGTAGAACAACCAATCATTATCATTCTCACCCGTACATAAATAACAAACAACACACCCCACACTGATATTAAGTGTTCGTTTAACATGAAAATTCAAGAATACAATTTTCTCTTACTTGAGACTAGTAGGATGAATAGATCTCGATCATAATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGATTCAAGTCAACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGCGAGTTGAGCTGATGAATCACGAGCCAAAACAAATGAGAAATGCATGAATCTCAAAATATCAGATATATCATAACTTAGTTAACAGATCTCATGTGGTAACAAAGGTCCATCGCATTTGGTCCTGAGTACTGTACATCAGGAATCTCANACCCTTAATTATTAC AATTCANATGTTGTAATCCTGTACTATG                                                                                                                                           ]
[-] EMBL CD124136             [                                                                                                                                                                                                                                                          ATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGACTCAAATCAACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGTGAGTTGAGCTGATGAATCACGAGCCAAGACAAATGAGAGTTACATGAATCTCAAGATATCAGATATATCATAACCAAATTAACAGATCTCATGTGGTAGCAAAGGTCCATCGCATTCGGTCCTGAGCACTGTCCATGAGGAATCTCAAACCCTT ATTATTACAAATTCAAATGTTGTAATCCTGTACTATGTAAAAGTTTGTTATTTCTTCAACTTCTCTAATTCTATACAGCGCATGTTAAATTCGATTTTCCGAATTTGGAAGCACCTATTATAGAAAAAGCTGAACGCTATGAAAGTAAGTCAAAATAATGAATTACACGCAGTTTA]




>consensus_6218#1
CACACACCCAAAGTCTGATGCAATTCAACAACAATAATAATCAGGATAGGTATATATATA
ACACATATGACACCTGTCACACGATCCACATTTCTGACTCAGTAGAACAACCAATCATTA
TCATTCTCACCCGTACATAAATAACAAACAACACACCCCACACTGATATTAAGTGTTCGT
TTAACATGAAAATTCAAGAATACAATTTTCTCTTACTTGAGACTAGTAGGATGAATAGAT
CTCGATCATAATGGAATTGTTCACGCTGAGGCTCGAAACCACCAATCCCGGATTCAAGTC
AACACTTTGAAAGGAATCATATTGAAGTTTCTTTGAGGAAATCAGCCCTGAGAGAAAGCG
AGTTGAGCTGATGAATCACGAGCCAAAACAAATGAGAAATGCATGAATCTCAAAATATCA
GATATATCATAACTTAGTTAACAGATCTCATGTGGTAACAAAGGTCCATCGCATTTGGTC
CTGAGTACTGTACATCAGGAATCTCANACCCTTAATTATTACAATTCANATGTTGTAATC
CTGTACTATGTAAAAGTTTGTTATTTCTTCAACTTCTCTAATTCTATACAGCGCATGTTA
AATTCGATTTTCCGAATTTGGAAGCACCTATTATAGAAAAAGCTGAACGCTATGAAAGTA
AGTCAAAATAATGAATTACACGCAGTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6218#0      TTGGATCTCCCTTACAGCCACTCAATTTTTGTCAGATATTCAAAATTTGCAGAACGTTTA 60
consensus_6218#1      --------------CACACACCCAAAGTCTGATGCA-ATTCAACAACAATA--ATAATCA 43
                                    **  *** ***  * **    * ****** *     *  *   * *

consensus_6218#0      CAAGATGGAATTTCGTAAGTTCTTTTAATAACCGAGTACTTTTCAACATTCGAAGCACAA 120
consensus_6218#1      GGATAGGTATATATATAA-CACATATGACACCTGTCACACGATCCACATTTCTGACTCAG 102
                        * * * *  *   ***   * * * * * * *        ** *****     * ** 

consensus_6218#0      TGACATAATTTGCAGACTAATTCTCTTAATAATATGAAGTGAAGTGAAGATTGTGTAACT 180
consensus_6218#1      TAGAACAACCAATC-ATTATCATTCTCACCCGTACA---TAAATAACAAACAACACACCC 158
                      *   * **       * **    *** *    **     * **    * *      * * 

consensus_6218#0      CCCATTGATACAACTTCGAAAGTTC-CTCAAAATGAACGATTTTGTGAATTAAACTTTGA 239
consensus_6218#1      CACACTGATA-----TTAAGTGTTCGTTTAACATGAA--AATTCAAGAATACAATTTTCT 211
                      * ** *****     *  *  ****  * ** *****  * **   ****  ** ***  

consensus_6218#0      TATATTTAGTGGTAGT-GTTTCAACAATGATCGGT--TGATGATGTCAATCG----AAAA 292
consensus_6218#1      CTTACTTGAGACTAGTAGGATGAATAGATCTCGATCATAATGGAATTGTTCACGCTGAGG 271
                        ** **     **** *  * ** *    *** *  * ***   *   **      *  

consensus_6218#0      CTTAACTTTTATAAACGGTGGGATACTAGTTATAACGCTAGGGTTTCTTCTTATAACAGT 352
consensus_6218#1      CTCGAAACCACCAATC--CCGGATTCAAGTCAACACTTTGAAAGGAATCATATTGAAGTT 329
                      **  *       ** *    **** * *** *  **  *        *  *  * *   *

consensus_6218#0      CCTTTCAACTTTTACACGCATGTAGGACGGTAATTTACCT--TAGACGAACATCTACACT 410
consensus_6218#1      TCTTTGAGGAAATCAGCCCTGAGAGAAAGCGAGTTGAGCTGATGAATCACGAGCCAAAAC 389
                       **** *     *   * *    ** * *  * ** * **  *  *  *  * * * *  

consensus_6218#0      AGATTCCT--TCCATGTGTC-CATTCTACAAGACTTCAACACAACTCAGATCAAGAACAC 467
consensus_6218#1      AAATGAGAAATGCATGAATCTCAAAATATCAGA-TATATCATAACTTAG-TTAACAGATC 447
                      * **      * ****  ** **   **  *** *  * ** **** ** * ** *   *

consensus_6218#0      GAGATTAGCCTCACTAGAACGTCG-ATATATTTCAATACACCCAAAGTCTGA---CGCAA 523
consensus_6218#1      TCATGTGGTAACAAAGGTCCATCGCATTTGGTCCTGAGTACTGTACATCAGGAATCTCAN 507
                           * *   **   *  * *** ** *  * *     **   *  ** *    * ** 

consensus_6218#0      TCCAACAAGAATAGTTATCAGGATAG-GTAAATATATAACACATATGACACCTGTCACAC 582
consensus_6218#1      ACCCTTAATTATTACAATTCANATGTTGTAATCCTGTACTATGTA-AAAGTTTGTTATTT 566
                       **   **  **    **    **   ****   * **  *  **  *    *** *   

consensus_6218#0      TATCCACATTTCTGACTCAGTAAAACAACCGATCATTATCATTCTC---ACCTGCACATA 639
consensus_6218#1      CTTCAACTTCTCTAATTCTATACAGCGCATGTTAAATTCGATTTTCCGAATTTGGAAGCA 626
                        ** ** * *** * **  ** * *    * * * *   *** **   *  ** *   *

consensus_6218#0      AATAACANACAACACACCCCACACT--GATATTAAGT---ATTCGTTTAGCATGAAAATT 694
consensus_6218#1      CCTATTATAGAAAAAGCTGAACGCTATGAAAGTAAGTCAAAATAATGAATTACACGCAGT 686
                        **  * * ** *  *   ** **  ** * *****   * *  *  *  *     * *

consensus_6218#0      CAAGA 699
consensus_6218#1      TTA-- 689
                        *