cluster # 6219

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6219 cluster # 6219 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6219#0 length = 452 sequences # 3

consensus_6219#1 length = 229 sequences # 1

consensusID : consensus_6219#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 452
fasta sequence

                              [CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCG-TCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCATCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCAGTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAGCGGTTCACAGGAAACGGAGTCT]

[+] EMBL CD131754             [CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCTCCTCCTCCTCCTCCACCACCACCATAGTGTCCACGACCACTGGTACAATCCCGAGCAGTATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGACTCGATACGCCGCGATTACCTCCGCCTCCATCTCTATCACCATCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCAGTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTACTGAGACCCAGCGGTTCACAGGAAACGGAGTCT]
[+] EMBL CD146166             [                                                                                                                      CTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTAGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCG TCCGCCGCGATAACCTCCGCCTCCACCTCTACC                                                                                                                                                            ]
[-] EMBL CD155517             [                                                                                                                       TCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCG TCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCAcc                                                                                                                                                      ]




>consensus_6219#0
CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGA
CGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCT
CCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCA
TAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGA
TCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCA
TCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCA
GTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTAC
TGAGACCCAGCGGTTCACAGGAAACGGAGTCT

consensusID : consensus_6219#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence

                              [TTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTCATAACCACCTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA]

[-] EMBL CD148244             [TTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTCATAACCACCTCCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA]




>consensus_6219#1
TTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCTCATAACCACCTCCTCC
TCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATG
ATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGATCTCT
TCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6219#0      CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGA 60
consensus_6219#1      ------------------------------------------TTGAAACAGCCGTCTCGA 18
                                                                ******************

consensus_6219#0      CGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCT 120
consensus_6219#1      CGACCATCGTTATTGTCACGATCTCT-----------------------CATAACCACCT 55
                      **************************                       *   *  ****

consensus_6219#0      CCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCA 180
consensus_6219#1      CCTCCTCCTCCTCCACCACCACCACCATAGTGTCCACGACCACTGGTACAATCTCGAGCA 115
                      ************************************************************

consensus_6219#0      TAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGA 240
consensus_6219#1      TAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTCGACGACCATCGTTATTGTCACGA 175
                      ************************************************************

consensus_6219#0      TCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCA 300
consensus_6219#1      TCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTA------ 229
                      ******************************************************      

consensus_6219#0      TCTCTTGGGGCAGCTTGGCAATCGCGATGCATGATGACCGGGACGTCCACGTTTGAATCA 360
consensus_6219#1      ------------------------------------------------------------
                                                                                  

consensus_6219#0      GTCGTCCGACATCTTAAGAACTCACTAGCATACCTTACACCCTGACTCTCAACGCACTAC 420
consensus_6219#1      ------------------------------------------------------------
                                                                                  

consensus_6219#0      TGAGACCCAGCGGTTCACAGGAAACGGAGTCT 452
consensus_6219#1      --------------------------------