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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1036 fasta sequence
[GGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCGAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACAAGAACTGGAAAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAAAGCTGGTCGGCGGCATATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAGTAAGACTATAAACAACAATCATGTCTTCAGTTCCGATCACCTCATCTCTTCCACTCATTGACAAAATTAATTCAGTCATAGAACAAGGTAATAAAAGTATTCTCACAAAATATCATCATATATGGCGTTTATTCAACAGTCTAAACATGAACCTGTTCATATTAGAGAAACAGTCAAAATTATGTAAACAAATGTAGAAAACTATGCAGTTAGTTAGTTTGTTTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCGATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCGGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACA]
[+] EMBL CD129316 [GGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCGAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACAAGAACTGGAAAGAACTAGAAAAGAAGGCCCAGGACAGAGTGGGTTGGAGAAAGCTGGTCGGCGGCATATGCTCCATTGGGAGTAACAGGCGTAAGTAAGTAAGTAAGTAAGACTATAAACAACAATCATGTCTTCAGTTCCGATCACCTCATCTCTTCCACTCATTGACAAAATTAATTCAGTCATAGAACAAGGTAATAAAAGTATTCTCACAAAATATCATCATATATGGCGTTTATTCAACAGTCTAAACATGAACCTGTTCATATTAGAGAAACAGTCAAAATTATGTAAACAAATGTAGAAAACTATGCAGTTAGTTAGTTTGTTTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCGATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTAC ]
[-] EMBL CD153966 [ tnTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTNTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATAACAAGACCTATCAGTCGGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCACCTTCAAACAACAGCAATAAATAAGTACTGTGTGCAAAATATTTCACCATTTCTAATAATAATTGTGACACTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACA]
consensusID : consensus_6221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1002 fasta sequence
[CTAAACATGAACCTGTTCATATAGAGAAACAGTCAAAATTATGTAANCAAATGTAGANAACTATGCAGTTAGTTAGTNTGTNTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATTACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCACACATGATACCACTAGTCACAAATTTTAGGAGTCGATTAGTTCTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACATTCTCTATCATTCTACTATTCTCCAATGTTGTACATTTGAAATTCTAGAATTATAAAATAGGGGAAAATAATTCATCCAGACACTTGAGTATTTTCAACGTGCTGTCCTGCTCTCCACATATTTTCATGACTGTAATGTGTGCAAGTGTATGTGATAGGATTGAGAGGACGTAATGTGGCTAGAGTTTTATAATAAATGAGTCGTGATGAATTAAGAAGAGATTAAGATGGTGTGTAAGTGGTAATGTTGTGTTTTGCTGGTGGTGTAGTTTGTTGGAGGTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAAGTGGGGTGAGGTGAT]
[-] EMBL CD154267 [CTAAACATGAACCTGTTCATATAGAGAAACAGTCAAAATTATGTAANCAAATGTAGANAACTATGCAGTTAGTTAGTNTGTNTGTCAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTTTCATAGGTAATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCATTTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCGTTGAAATTACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATACCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAACAATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCATTTATTTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCACACATGATACCACTAGTCACAAATTTTAGGAGTCGATTAGTTCTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGA ]
[+] EMBL CD147071 [ AGTCGATTAGTTCTACCCAGTAACAAGGTGCATTAGCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAACCGGTGGAAAGAGCTACACACACACACACACATTCTCTATCATTCTACTATTCTCCAATGTTGTACATTTGAAATTCTAGAATTATAAAATAGGGGAAAATAATTCATCCAGACACTTGAGTATTTTCAACGTGCTGTCCTGCTCTCCACATATTTTCATGACTGTAATGTGTGCAAGTGTATGTGATAGGATTGAGAGGACGTAATGTGGCTAGAGTTTTATAATAAATGAGTCGTGATGAATTAAGAAGAGATTAAGATGGTGTGTAAGTGGTAATGTTGTGTTTTGCTGGTGGTGTAGTTTGTTGGAGGTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGGAAGTGGGGTGAGGTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6221#0 GGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCA 60
consensus_6221#1 ------------------------------------------------------------
consensus_6221#0 CATGGAATCCTGAAGGTCGAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAA 120
consensus_6221#1 ------------------------------------------------------------
consensus_6221#0 TAGAGACAGACATGAGAAGAATGAACAAGAACTGGAAAGAACTAGAAAAGAAGGCCCAGG 180
consensus_6221#1 ------------------------------------------------------------
consensus_6221#0 ACAGAGTGGGTTGGAGAAAGCTGGTCGGCGGCATATGCTCCATTGGGAGTAACAGGCGTA 240
consensus_6221#1 ------------------------------------------------------------
consensus_6221#0 AGTAAGTAAGTAAGTAAGACTATAAACAACAATCATGTCTTCAGTTCCGATCACCTCATC 300
consensus_6221#1 ------------------------------------------------------------
consensus_6221#0 TCTTCCACTCATTGACAAAATTAATTCAGTCATAGAACAAGGTAATAAAAGTATTCTCAC 360
consensus_6221#1 ------------------------------------------------------------
consensus_6221#0 AAAATATCATCATATATGGCGTTTATTCAACAGTCTAAACATGAACCTGTTCATATTAGA 420
consensus_6221#1 ----------------------------------CTAAACATGAACCTGTTCATAT-AGA 25
********************** ***
consensus_6221#0 GAAACAGTCAAAATTATGTAAACAAATGTAGAAAACTATGCAGTTAGTTAGTTTGTTTGT 480
consensus_6221#1 GAAACAGTCAAAATTATGTAANCAAATGTAGANAACTATGCAGTTAGTTAGTNTGTNTGT 85
********************* ********** ******************* *** ***
consensus_6221#0 CAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCGATATGTACATGTTTCATAGGTA 540
consensus_6221#1 CAATCGAAACCAATCGTGTGTCAACTCACGTTACTTCTATATGTACATGTTTCATAGGTA 145
************************************* **********************
consensus_6221#0 ATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCAT 600
consensus_6221#1 ATCAAGTAAGTAGTATGTTCATAGGTAGGTTAATAAAAAGCGTGCAATTGCAAAAGTCAT 205
************************************************************
consensus_6221#0 TTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCG 660
consensus_6221#1 TTAACATGGATTTTACACATCATTGAGACGTCATGTTAGTTGTGGTCATAATGCATTCCG 265
************************************************************
consensus_6221#0 TTGAAATAACAAGACCTATCAGTCGGATAACCAAAGCTACCAATGGATAAAACCGCTATA 720
consensus_6221#1 TTGAAATTACAAGACCTATCAGTCAGATAACCAAAGCTACCAATGGATAAAACCGCTATA 325
******* **************** ***********************************
consensus_6221#0 CCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAAC 780
consensus_6221#1 CCAGTATAACATTCATTTTTACCAAACTGCTTCATTCCAAAAATTCATATTGTACCAAAC 385
************************************************************
consensus_6221#0 AATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCA 840
consensus_6221#1 AATCGAAATGACCATAAGTCTTCTCTCATTGAAGTCAACGGTTAGTTGACCAGATCTCCA 445
************************************************************
consensus_6221#0 TTTATTTATCACCT-TCAAACAACAGCAATAAAT-------AAGTACTGTG--TGCAAAA 890
consensus_6221#1 TTTATTTATCAACTATTAAGCAAAGGTGACAAAACACATTAAAACACTACCACCACACAT 505
*********** ** * ** *** * * *** ** *** ** *
consensus_6221#0 TATTTCACCATTTCTAA----TAATAATTG--TGACACTACCCAGTAACAAGGTGCATTA 944
consensus_6221#1 GATACCACTAGTCACAAATTTTAGGAGTCGATTAGTTCTACCCAGTAACAAGGTGCATTA 565
** *** * * ** ** * * * * ***********************
consensus_6221#0 GCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAA 1004
consensus_6221#1 GCAGATCACAGCATGAAACATTGAGGCGCGTTGTTCTTGAAGATGCAGCACCAACATCAA 625
************************************************************
consensus_6221#0 CCGGTGGAAAGAGCTACACACACACACACACA---------------------------- 1036
consensus_6221#1 CCGGTGGAAAGAGCTACACACACACACACACATTCTCTATCATTCTACTATTCTCCAATG 685
********************************
consensus_6221#0 ------------------------------------------------------------
consensus_6221#1 TTGTACATTTGAAATTCTAGAATTATAAAATAGGGGAAAATAATTCATCCAGACACTTGA 745
consensus_6221#0 ------------------------------------------------------------
consensus_6221#1 GTATTTTCAACGTGCTGTCCTGCTCTCCACATATTTTCATGACTGTAATGTGTGCAAGTG 805
consensus_6221#0 ------------------------------------------------------------
consensus_6221#1 TATGTGATAGGATTGAGAGGACGTAATGTGGCTAGAGTTTTATAATAAATGAGTCGTGAT 865
consensus_6221#0 ------------------------------------------------------------
consensus_6221#1 GAATTAAGAAGAGATTAAGATGGTGTGTAAGTGGTAATGTTGTGTTTTGCTGGTGGTGTA 925
consensus_6221#0 ------------------------------------------------------------
consensus_6221#1 GTTTGTTGGAGGTGTTGTTATTGTTATTACCACTACCAACAACAACAAGCTGGAAATGGG 985
consensus_6221#0 -----------------
consensus_6221#1 AAGTGGGGTGAGGTGAT 1002
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||