cluster # 6228

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Schistosoma mansoni
cluster # 6228 cluster # 6228 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6228#0 length = 626 sequences # 2

consensus_6228#1 length = 318 sequences # 1
consensus_6228#2 length = 315 sequences # 1

consensusID : consensus_6228#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 626
fasta sequence

                              [TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGATAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAGTAATAATCGCATAACTCAGAAATCACCATCAAATCATTCATTGAGAGTTACAGGTTTTGTATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGAAATTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCAATAACCTCAAATCACACATTGTGAGCANATGTTTTCACTAGAAAAAATACTTTTATTGCTATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATATGTTGACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAGCGTCGCTCACTATCATCGTTTCAAAGCGAA]

[+] EMBL CD162349             [TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGATAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAGTAATAATCGCATAACTCAGAAATCACCATCAAATCATTCATTGAGAGTTACAGGTTTTGTATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGAAATTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCAATAACCTCAAATCACACATTGTGAGCANAT                                                                                                                                                                                ]
[-] EMBL CD162373             [                                                                                                                                                                                                   cGTNTGATATTCTCATATGAAATCAACTTATTCATTTCAAAGAAATTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCAATAACCTCAAATCTCACATTGTGAGCAAATGTTTTCACTAGAAAAAATACTTTTATTGCTATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATATGTTGACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAGCGTCGCTCACTATCATCGTTTCAAAGCGAA]




>consensus_6228#0
TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGA
TAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAG
TAATAATCGCATAACTCAGAAATCACCATCAAATCATTCATTGAGAGTTACAGGTTTTGT
ATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGAAA
TTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACAT
GTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCT
TGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCA
ATAACCTCAAATCACACATTGTGAGCANATGTTTTCACTAGAAAAAATACTTTTATTGCT
ATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATATGTT
GACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAGCGTC
GCTCACTATCATCGTTTCAAAGCGAA

consensusID : consensus_6228#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTATGTAAACCAAACGATGGGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAAAATTTTAAAATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTTACATTCACTAATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAGAACATCTGAAACTCAAAACAACTGTCAACCAACACAAAGATCATCGTATACGGATTACCTCGATATTGCCTTAAGTTACAAGCTTTAT]

[+] EMBL CD159924             [TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTATGTAAACCAAACGATGGGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAAAATTTTAAAATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTTACATTCACTAATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAGAACATCTGAAACTCAAAACAACTGTCAACCAACACAAAGATCATCGTATACGGATTACCTCGATATTGCCTTAAGTTACAAGCTTTAT]




>consensus_6228#1
TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTATGTAAACCAAACGATG
GGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAAAATTTTAAA
ATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTTACATTCACTA
ATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAGAACATCTGAA
ACTCAAAACAACTGTCAACCAACACAAAGATCATCGTATACGGATTACCTCGATATTGCC
TTAAGTTACAAGCTTTAT

consensusID : consensus_6228#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence

                              [GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGCGTGGAACCGTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCTAATATGTTGACCCAAGCCCCGATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTATTCCGTAAGCCGTCGAGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTATACAGCAACAAATTGTCCTTGAGCATCATAAATA]

[+] EMBL CD162280             [GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGCGTGGAACCGTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCTAATATGTTGACCCAAGCCCCGATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTATTCCGTAAGCCGTCGAGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTATACAGCAACAAATTGTCCTTGAGCATCATAAATA]




>consensus_6228#2
GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTT
GCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGCGTGGAACC
GTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCTAATATGTTGACCCAAGCCCC
GATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTATTCCGTAAGCCGTCG
AGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTATACAGCAACAAATTGTCCT
TGAGCATCATAAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6228#1      --------TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTAT-GTAAAC 51
consensus_6228#0      TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGA 60
consensus_6228#2      -------------GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAG 47
                                    **  * *     **  *       *   *     *   *   *   

consensus_6228#1      CAAACGATGGGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAA 111
consensus_6228#0      TAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAG 120
consensus_6228#2      CTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGA 107
                        *        *     *    **     *          * *                 

consensus_6228#1      -AATTTTAAAATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTT 170
consensus_6228#0      TAATAATCGCATAA-CTCAGAAATCACCATCAAATCATTCATTGAGAGTTACA-GGTTTT 178
consensus_6228#2      ATAGCGTGGAACCGTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCT-AATATG 166
                        *   *   *       *                    *        ** *    * * 

consensus_6228#1      ACATTCACTAATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAG 230
consensus_6228#0      GTATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGA 238
consensus_6228#2      TTGACCCAAGCCCCGATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTAT 226
                           *           *  *  * *                        *         

consensus_6228#1      AACATCTGAAACTCAAAACAA-CTGTCAACCAACACAAAGATCATCGTATACGGATTAC- 288
consensus_6228#0      AATTTGTTCGCAGAAGTATAC-AAGTGAAACATGCCAAAGAGCGAC-CACATCGACTATG 296
consensus_6228#2      TCCGTAAGCCGTCGAGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTA-TACA 285
                          *         *  * *     * **       *** *         *   * **  

consensus_6228#1      -CTCGATATTGCCTTAAGTTAC--AAGCTTTAT--------------------------- 318
consensus_6228#0      ACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCAT 356
consensus_6228#2      GCAACAAATTGTCCTTGAGCATCATAAATA------------------------------ 315
                       *      ***   *     *    *                                  

consensus_6228#1      ------------------------------------------------------------
consensus_6228#0      GGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTT 416
consensus_6228#2      ------------------------------------------------------------
                                                                                  

consensus_6228#1      ------------------------------------------------------------
consensus_6228#0      TGCAATAACCTCAAATCACACATTGTGAGCANATGTTTTCACTAGAAAAAATACTTTTAT 476
consensus_6228#2      ------------------------------------------------------------
                                                                                  

consensus_6228#1      ------------------------------------------------------------
consensus_6228#0      TGCTATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATA 536
consensus_6228#2      ------------------------------------------------------------
                                                                                  

consensus_6228#1      ------------------------------------------------------------
consensus_6228#0      TGTTGACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAG 596
consensus_6228#2      ------------------------------------------------------------
                                                                                  

consensus_6228#1      ------------------------------
consensus_6228#0      CGTCGCTCACTATCATCGTTTCAAAGCGAA 626
consensus_6228#2      ------------------------------