cluster # 6229

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Schistosoma mansoni
cluster # 6229 cluster # 6229 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6229#0 length = 658 sequences # 2

consensus_6229#1 length = 264 sequences # 1
consensus_6229#2 length = 179 sequences # 1

consensusID : consensus_6229#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 658
fasta sequence

                              [GATGATATCCATCGACTCCATTCATGAATTTCATTTTGATGGTTTAGCTGGCGTAACATTCGAATTCCTGGTACCAAGAAATATGAAGATGTATTTACCGTTGAGTCTAGTGTAAACACGTGGAATCAGCAGTTAGAGAACCAACAGTACAGATCTGAAAAACAGCACAGCACACAACGTTAAACGAGGACTTCACNCCAAGAGAGAACACTGTGGGAATCATGAGCCTCTTTATTTCAAAATCAAAAAGCGCGGTGCGCGAGAGTACAGCGGGAAGAGTCAGTTTACAAAGTAGTCTTATGAGTCATCCTGTAAGCTTAGTGTACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTTATGTTTGGTCGCCCTGCAATAGAAAGAAAATANGATGCATTGGTATATCATACATAGCAATTTCAACTCCGTTACACCGCCCCCTCTCTTAAATAGGCACTGTCCTCAGTGCCTGGTCTCGGACATGGATATGCTGTCCCTCCTTCTGATGGTACCTCATAAAACGTAGTGGCAGGCGGTGGATTGGCGAACTGAGTATCCGAGGAGACTGTCATCTTATCTGGTTTTATTTGGTTATAGTGTACAGTCATCACGTCATCCTGGGGTCGTTGCAAGTTACGTAATACGAACGTAGTGTGG]

[-] EMBL SM762                [GATGATATCCATCGACTCCATTCATGAATTTCATTTTGATGGTTTAGCTGGCGTAACATTCGAATTCCTGGTACCAAGAAATATGAAGATGTATTTACCGTTGAGTCTAGTGTAAACACGTGGAATCAGCAGTTAGAGAACCAACAGTACAGATCTGAAAAACAGCACAGCACACAACGTTAAACGAGGACTTCACNCCAAGAGAGAACACTGTGGGAATCATGAGCCTCTTTATTTCAAAATCAAAAAGCGCGGTGCGCGAGAGTACAGCGGGAAGAGTCAGTTTACAAAGTAGTCTTATGAGTCATCCTGTAAGCTTAGTGTACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTTATGTTTGGTCGCCCTGCAATAGAAAGAAAATANGATGCATTGG                                                                                                                                                                                                                                                                 ]
[+] EMBL AI975844             [                                                                                                                                                                                                                                AGCCTCTTTATTTCAAAATCAAAAAGCGAGGTGCGCGAGGGTACAGCGGGAAGAGTCAGTTTACAAAGTAGTCTTATGAGTCATCCTGTAAGGTTAGTGTACATAGGGCTTGTTCTTCTTCCTCCAAAGAGTTTATGTTTAGTCGCCCTGCAACAGAAAGAAAATAGAATGCATTAGTATATCATACATAGCAATTTCAACTCCGTTACACCGCCCCCTCTCTTAAATAGGCACTGTCCTCAGTGCCTGGTCTCGGACATGGATATGCTGTCCCTCCTTCTGATGGTACCTCATAAAACGTAGTGGCAGGCGGTGGATTGGCGAACTGAGTATCCGAGGAGACTGTCATCTTATCTGGTTTTATTTGGTTATAGTGTACAGTCATCACGTCATCCTGGGGTCGTTGCAAGTTACGTAATACGAACGTAGTGTGG]




>consensus_6229#0
GATGATATCCATCGACTCCATTCATGAATTTCATTTTGATGGTTTAGCTGGCGTAACATT
CGAATTCCTGGTACCAAGAAATATGAAGATGTATTTACCGTTGAGTCTAGTGTAAACACG
TGGAATCAGCAGTTAGAGAACCAACAGTACAGATCTGAAAAACAGCACAGCACACAACGT
TAAACGAGGACTTCACNCCAAGAGAGAACACTGTGGGAATCATGAGCCTCTTTATTTCAA
AATCAAAAAGCGCGGTGCGCGAGAGTACAGCGGGAAGAGTCAGTTTACAAAGTAGTCTTA
TGAGTCATCCTGTAAGCTTAGTGTACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTTAT
GTTTGGTCGCCCTGCAATAGAAAGAAAATANGATGCATTGGTATATCATACATAGCAATT
TCAACTCCGTTACACCGCCCCCTCTCTTAAATAGGCACTGTCCTCAGTGCCTGGTCTCGG
ACATGGATATGCTGTCCCTCCTTCTGATGGTACCTCATAAAACGTAGTGGCAGGCGGTGG
ATTGGCGAACTGAGTATCCGAGGAGACTGTCATCTTATCTGGTTTTATTTGGTTATAGTG
TACAGTCATCACGTCATCCTGGGGTCGTTGCAAGTTACGTAATACGAACGTAGTGTGG

consensusID : consensus_6229#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [GAGGCAGGTGTAACACGTGGAATCAGCAGTTAGAGAACAACAGGACAGATCTGAAAACAGCATAGCACACAATGTTAAACGAGGCCTTCACACCAAGAGAGAACACGGTGGGAATCACGAGCCTTTTTATTCCAAAATCAAAAAGCGCGGTGCGCGAGAGTATAGCGGGAAGAGTCAATTCACAAAGTAGTCTTATGAGTCATCCTGTAAGCTTAGTGAACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTCATTTTTGGTCG]

[+] EMBL BG932469             [GAGGCAGGTGTAACACGTGGAATCAGCAGTTAGAGAACAACAGGACAGATCTGAAAACAGCATAGCACACAATGTTAAACGAGGCCTTCACACCAAGAGAGAACACGGTGGGAATCACGAGCCTTTTTATTCCAAAATCAAAAAGCGCGGTGCGCGAGAGTATAGCGGGAAGAGTCAATTCACAAAGTAGTCTTATGAGTCATCCTGTAAGCTTAGTGAACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTCATTTTTGGTCG]




>consensus_6229#1
GAGGCAGGTGTAACACGTGGAATCAGCAGTTAGAGAACAACAGGACAGATCTGAAAACAG
CATAGCACACAATGTTAAACGAGGCCTTCACACCAAGAGAGAACACGGTGGGAATCACGA
GCCTTTTTATTCCAAAATCAAAAAGCGCGGTGCGCGAGAGTATAGCGGGAAGAGTCAATT
CACAAAGTAGTCTTATGAGTCATCCTGTAAGCTTAGTGAACATAGGGCTTGCTCTTCTTC
CTCTAAAGAGTTCATTTTTGGTCG

consensusID : consensus_6229#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 179
fasta sequence

                              [GAACGAGTTATTGATAATTATCCACAATAAACTTCTGTCTTCTCTCTTGCGACATTGCGGTTCCGATCGTTAAAGTTGTCTAGTAGTACGCGGCATAGCAAGAATCTAAAGCTTTAGATATAACAACTTTGATCAATTTAAAGCTTTTCTAGAGTGCCATGAAAAACGTTTCGAACAGT]

[+] EMBL CD146062             [GAACGAGTTATTGATAATTATCCACAATAAACTTCTGTCTTCTCTCTTGCGACATTGCGGTTCCGATCGTTAAAGTTGTCTAGTAGTACGCGGCATAGCAAGAATCTAAAGCTTTAGATATAACAACTTTGATCAATTTAAAGCTTTTCTAGAGTGCCATGAAAAACGTTTCGAACAGT]




>consensus_6229#2
GAACGAGTTATTGATAATTATCCACAATAAACTTCTGTCTTCTCTCTTGCGACATTGCGG
TTCCGATCGTTAAAGTTGTCTAGTAGTACGCGGCATAGCAAGAATCTAAAGCTTTAGATA
TAACAACTTTGATCAATTTAAAGCTTTTCTAGAGTGCCATGAAAAACGTTTCGAACAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6229#0      GATGATATCCATCGACTCCATTCATGAATTTCATTTTGATGGTTTAGCTGGCGTAACATT 60
consensus_6229#1      ------------------------------------------------------------
consensus_6229#2      ------------------------------------------------------------
                                                                                  

consensus_6229#0      CGAATTCCTGGTACCAAGAAATATGAAGATGTATTTACCGTTGAGTCTAGTGTAAACACG 120
consensus_6229#1      ------------------------------------------GAGGCAGGTGTAA-CACG 17
consensus_6229#2      ------------------------------------------------------------
                                                                                  

consensus_6229#0      TGGAATCAGCAGTTAGAGAACCAACAGTACAGATCTGAAAAACAGCACAGCACACAACGT 180
consensus_6229#1      TGGAATCAGCAGTTAGAGAAC-AACAGGACAGATCTGAAAA-CAGCATAGCACACAATGT 75
consensus_6229#2      ------------------------------------------------------------
                                                                                  

consensus_6229#0      TAAACGAGGACTTCACNCCAAGAGAGAACACTGTGGGAATCATGAGCCTCTTTATTTCAA 240
consensus_6229#1      TAAACGAGGCCTTCACACCAAGAGAGAACACGGTGGGAATCACGAGCCTTTTTATTCCAA 135
consensus_6229#2      -GAACGAGTTATTGATAATTATCCACAATA-------AACTTCTGTCTTCTCTCTTGCGA 52
                        ******   ** *     *   * ** *       **       * * * * ** * *

consensus_6229#0      AATCAAAAAGCGCGGTGCGCGAGAGTACAGCGGGAAGAGTCAGTTTACAAAGTAGTCTTA 300
consensus_6229#1      AATCAAAAAGCGCGGTGCGCGAGAGTATAGCGGGAAGAGTCAATTCACAAAGTAGTCTTA 195
consensus_6229#2      CATTGC--GGTTCCGATCGTTAAAGTTGTCTAGTAGTACGCGGCATAGCAAG-AATCTAA 109
                       **      *  * *  **  * ***      * *  *  *     *  *** * *** *

consensus_6229#0      TGAGTCA--TCCTGTAAGCTTAGTGTACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTT 358
consensus_6229#1      TGAGTCA--TCCTGTAAGCTTAGTGAACATAGGGCTTGCTCTTCTTCCTCTAAAGAGTTC 253
consensus_6229#2      AGCTTTAGATATAACAACTTTGATCAATTTAAAGCTTTTCTAGAGTGCCATGAAAAA--C 167
                       *  * *  *     **  **  *  *  **  ****        * *  * ** *    

consensus_6229#0      ATGTTTGGTCGCCCTGCAATAGAAAGAAAATANGATGCATTGGTATATCATACATAGCAA 418
consensus_6229#1      ATTTTTGGTCG------------------------------------------------- 264
consensus_6229#2      GTTTCGAACAGT------------------------------------------------ 179
                       * *      *                                                 

consensus_6229#0      TTTCAACTCCGTTACACCGCCCCCTCTCTTAAATAGGCACTGTCCTCAGTGCCTGGTCTC 478
consensus_6229#1      ------------------------------------------------------------
consensus_6229#2      ------------------------------------------------------------
                                                                                  

consensus_6229#0      GGACATGGATATGCTGTCCCTCCTTCTGATGGTACCTCATAAAACGTAGTGGCAGGCGGT 538
consensus_6229#1      ------------------------------------------------------------
consensus_6229#2      ------------------------------------------------------------
                                                                                  

consensus_6229#0      GGATTGGCGAACTGAGTATCCGAGGAGACTGTCATCTTATCTGGTTTTATTTGGTTATAG 598
consensus_6229#1      ------------------------------------------------------------
consensus_6229#2      ------------------------------------------------------------
                                                                                  

consensus_6229#0      TGTACAGTCATCACGTCATCCTGGGGTCGTTGCAAGTTACGTAATACGAACGTAGTGTGG 658
consensus_6229#1      ------------------------------------------------------------
consensus_6229#2      ------------------------------------------------------------