These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6240#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 631 fasta sequence [ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCACTCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATTGTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATTCCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAGATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTGGTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACACAAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTGGTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTCATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAAAATTCTCACAAGGAAATCTAAATGCACAACA] [+] EMBL CD122583 [ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCACTCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATTGTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATTCCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAGATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAAC ] [+] EMBL CD163411 [ TACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTGGTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACACAAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTGGTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTCATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAAAATTCTCACAAGGAAATCTAAATGCACAAC ] [-] EMBL CD163477 [ ACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTGGTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACACAAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTGGTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTCATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAAAATTCTCACAAGGAAATCTAAATGCACAACA] consensusID : consensus_6240#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [CGGACGCATCATCCACCATTATGTGCAAGTATATAGAAGCATAGAGTGAAGTAAATTGAGAGCATATATCTGACAAACAAGTAAAACAATAGGACATTAAAAAATCAATGTGAACATATTCTTGTTTATTGAATATACATTAGAGAGTAGGAGTTTTAACTGACAGCAAAACATCCGTTAAAAGAAAACTAATTTAGTCTGTTAAAAATCTGCATTCATTTTAATACGTCAAGTTAATAGACTTACAATAGTAGA] [+] EMBL CD064029 [CGGACGCATCATCCACCATTATGTGCAAGTATATAGAAGCATAGAGTGAAGTAAATTGAGAGCATATATCTGACAAACAAGTAAAACAATAGGACATTAAAAAATCAATGTGAACATATTCTTGTTTATTGAATATACATTAGAGAGTAGGAGTTTTAACTGACAGCAAAACATCCGTTAAAAGAAAACTAATTTAGTCTGTTAAAAATCTGCATTCATTTTAATACGTCAAGTTAATAGACTTACAATAGTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6240#0 ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCAC 60 consensus_6240#1 ------------------------------------------------------------ consensus_6240#0 TCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATT 120 consensus_6240#1 ------------------------------------------------------------ consensus_6240#0 GTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATT 180 consensus_6240#1 ------------------------------------------------------------ consensus_6240#0 CCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAG 240 consensus_6240#1 ------------------------------------------------------CGGACG 6 *** * consensus_6240#0 ATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGT 300 consensus_6240#1 CATCATCCACCATTATGTGCAAGTATAT---------AGAAGCATAGA-GTGAAGTAAAT 56 *** *** *** * ** * ** * * * *** ** * consensus_6240#0 GCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTG 360 consensus_6240#1 -TGAGAGCATATAT-CTGACA--AACAAGTAAAACAATA-----GGACATTAAAAAATCA 107 * ** * *** **** * *** * * ** ** * * *** consensus_6240#0 GTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACAC 420 consensus_6240#1 ATGTGAACATATTCTTGTTTATTGAATATACATTAG--AGAGTAGGAGTTTTAA---CTG 162 ** * ** *** * **** * *** * * ***** ** * consensus_6240#0 AAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTG 480 consensus_6240#1 ACAGCAAAACATCCGTTAAAAGAAAAC--TAATTTAGTCTGTT---AAAAATCTGCATTC 217 * * *** * * * *** **** * ** ** * *** ** * * ** consensus_6240#0 GTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTC 540 consensus_6240#1 ATTTTAATACGTCAAGTTAATAGACT-TACAATAGTAGA--------------------- 255 *** **** *** ** * * ** ** * * * consensus_6240#0 ATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAA 600 consensus_6240#1 ------------------------------------------------------------ consensus_6240#0 AATTCTCACAAGGAAATCTAAATGCACAACA 631 consensus_6240#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||