cluster # 6241

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Schistosoma mansoni
cluster # 6241 cluster # 6241 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6241#0 length = 883 sequences # 3

consensus_6241#1 length = 378 sequences # 1

consensusID : consensus_6241#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 883
fasta sequence

                              [AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGTAAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCAACACGATATAGTTGGGTACGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAGACAAAAAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGCGTGACCTACAAAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAACATTGGCAACCACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTCGTCTTGGTACAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTGGCTAATAGTTGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGTATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTGGTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGTGTTTAAATTGAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAATATAAATATCCCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAATGGATCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG]

[-] EMBL CD084262             [AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGTAAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCAACACGATATAGTTGGGTACGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAGACAAAAAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGCGTGACCTACAAAGTATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD097416             [                                                                                                                                                                                                                                                                 GATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGCGTGACCTACAAAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAACATTGGCAACCACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTCGTCTTGGTACAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTGGCTAATAGTTGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGTATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTGGTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGTGTTTAAATTGAGTAGAACTTGACCCACT                                                                                                                                                ]
[-] EMBL CD133668             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATAACCTCCAATCGTATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTGATCTCTAAAATATACACGTTATATTAACTTACTTATAAACATGGATTGCGTGTTTAAATTGAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAATATAAATATCCCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAATGGATCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG]




>consensus_6241#0
AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGT
AAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCAACACGATATAGT
TGGGTACGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTTCCATG
AAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAGACAAA
AAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATT
AATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGCGTGACC
TACAAAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAACATTGGCAAC
CACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTCGTCTTGGTA
CAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTGGCTAATAGT
TGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGTATCGACAAC
ATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTG
GTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGTGTTTAAATT
GAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAATATAAATATC
CCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAATGGATCGACA
TCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG

consensusID : consensus_6241#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence

                              [CAGTTTACAAGAATATCTTGAACAATAGAATTTCCATGTATTAAATTTTGCACACAAACTAATGCTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCATCAGACAATAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGCGTGACCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCGTTTCGTTTCCTCAGGTTCTGGG]

[-] EMBL CD179693             [CAGTTTACAAGAATATCTTGAACAATAGAATTTCCATGTATTAAATTTTGCACACAAACTAATGCTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCATCAGACAATAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGCGTGACCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCGTTTCGTTTCCTCAGGTTCTGGG]




>consensus_6241#1
CAGTTTACAAGAATATCTTGAACAATAGAATTTCCATGTATTAAATTTTGCACACAAACT
AATGCTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATT
TCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCA
TCAGACAATAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGG
TATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGA
TGCGTGACCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCGTTTC
GTTTCCTCAGGTTCTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6241#0      AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGT 60
consensus_6241#1      ------------------------------------------------------CAGTTT 6
                                                                             * * *

consensus_6241#0      AAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCA-ACACGATATAG 119
consensus_6241#1      ACAAGAATATCTTGAACAAT-AGAATTTCCATGTATTAAATTT-TGCACACAAACTAATG 64
                      * **           *** * * *   *    **  **  **  **** ***   **  *

consensus_6241#0      TTGGGTA----CGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTT 175
consensus_6241#1      CTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATTTCTT 124
                       **  **       * ***   *** * * * *   ** *********************

consensus_6241#0      CCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAG 235
consensus_6241#1      CCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCATCAG 184
                      ************************************ ***********************

consensus_6241#0      ACAAAAAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAG-GACAGGAGGTAT 294
consensus_6241#1      ACAATAA-GGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGGTAT 243
                      **** ** *************************************** ************

consensus_6241#0      CTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGC 354
consensus_6241#1      CTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGC 303
                      ************************************** *********************

consensus_6241#0      GTGACCTACA---AAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAAC 411
consensus_6241#1      GTGACCGACATCAAGGCGCGGTAAA--AATCAGATCCTTTCA-AAGTCGCCCGCCGTTTC 360
                      ****** ***   * *   ** ***     * *** * *    ** **     * **  *

consensus_6241#0      ATTGGCAACCACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTC 471
consensus_6241#1      GTTTCC--TCAGGTTCTGGG---------------------------------------- 378
                       **  *   ** *   ** *                                        

consensus_6241#0      GTCTTGGTACAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTG 531
consensus_6241#1      ------------------------------------------------------------
                                                                                  

consensus_6241#0      GCTAATAGTTGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGT 591
consensus_6241#1      ------------------------------------------------------------
                                                                                  

consensus_6241#0      ATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTT 651
consensus_6241#1      ------------------------------------------------------------
                                                                                  

consensus_6241#0      CTGTATTTGGTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGT 711
consensus_6241#1      ------------------------------------------------------------
                                                                                  

consensus_6241#0      GTTTAAATTGAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAAT 771
consensus_6241#1      ------------------------------------------------------------
                                                                                  

consensus_6241#0      ATAAATATCCCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAAT 831
consensus_6241#1      ------------------------------------------------------------
                                                                                  

consensus_6241#0      GGATCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG 883
consensus_6241#1      ----------------------------------------------------