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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1239 fasta sequence
[AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGGAGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTATAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACAATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCACTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATTTTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACTTTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGGAATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGCTGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAATCGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC]
[+] EMBL CD184535 [AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGGAGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTATAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACAATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGC ]
[+] EMBL CD121073 [ ATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCACTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATTTTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACTTTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGGAATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGCTGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAA ]
[+] EMBL CD127627 [ AATT CAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAATCGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC]
consensusID : consensus_6242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence
[ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA]
[+] EMBL CD200890 [ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6242#0 AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGG 60
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 AGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTA 120
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 TAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACA 180
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 ATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTA 240
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 CAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTG 300
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 GTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTA 360
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 ATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCA 420
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 CTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATT 480
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 TTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACT 540
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 TTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGG 600
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 AATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGC 660
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 TGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTAC 720
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 CTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTG 780
consensus_6242#1 ------------------------------------------------------------
consensus_6242#0 ACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAAT 840
consensus_6242#1 ------------------------------------------------------ACTAGT 6
* *
consensus_6242#0 CGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAAT 900
consensus_6242#1 GATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAAT 66
* * * * * * **************************** **********
consensus_6242#0 CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGAC 960
consensus_6242#1 CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACAC 126
********************************************************* **
consensus_6242#0 GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCG 1020
consensus_6242#1 GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCG 186
************************************* **********************
consensus_6242#0 GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT 1080
consensus_6242#1 GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT 246
************************************************************
consensus_6242#0 ATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA 1140
consensus_6242#1 ATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA 306
******************** ***************************************
consensus_6242#0 AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG 1200
consensus_6242#1 AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG 366
************************************************************
consensus_6242#0 ATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC--------------------- 1239
consensus_6242#1 ATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTT 426
***** *********************************
consensus_6242#0 ------------------------------------------------------------
consensus_6242#1 CCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTAT 486
consensus_6242#0 -----------------------------------------------------------
consensus_6242#1 GATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA 545
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||