cluster # 6243

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Schistosoma mansoni
cluster # 6243 cluster # 6243 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6243#0 length = 769 sequences # 2

consensus_6243#1 length = 390 sequences # 2

consensusID : consensus_6243#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 769
fasta sequence

                              [AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTAGAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATTTATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTGACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAGGCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAATATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGATGGATAGTGGCTAGCGGTGGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGTAGTC-GCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA]

[+] EMBL CD071190             [AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTAGAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATTTATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTGACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAGGCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAATATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGATGGATAGTGGCTAGCGGTGGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGTAGTC GCAGTCGAAGTGTT                                                                                                                                                                                                               ]
[-] EMBL CD072577             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GATAGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCG AGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA]




>consensus_6243#0
AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTA
GAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATT
TATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTG
ACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAG
GCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAA
TATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGATG
GATAGTGGCTAGCGGTGGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGT
CTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCG
GTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAG
CCGTAGTCGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCAGAAA
GTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGG
AGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCG
AGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA

consensusID : consensus_6243#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 390
fasta sequence

                              [CGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCGGCTTCCGTCTCACCTTCAAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCCACACCTTCATTCTCGTGGTGGTTCCGCACTAATGCTTCGGCTTC]

[+] EMBL CD141113             [CGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGTG                                                                                                                                                                 ]
[-] EMBL CD146524             [                                                                                                                                         ttcacatTCTGTGTTCGCTCCAGTCGAATCGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCGGCTTCCGTCTCACCTTCAAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCCACACCTTCATTCTCGTGGTGGTTCCGCACTAATGCTTCGGCTTC]




>consensus_6243#1
CGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGG
GCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACACAAGTT
AGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCG
CTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGTGTCGGTGAGATG
GAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCGGCTTCCGTCTCA
CCTTCAAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCCACACCTTCATTCTC
GTGGTGGTTCCGCACTAATGCTTCGGCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6243#0      AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTA 60
consensus_6243#1      ------------------------------------------------------------
                                                                                  

consensus_6243#0      GAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATT 120
consensus_6243#1      ------------------------------------------------------------
                                                                                  

consensus_6243#0      TATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTG 180
consensus_6243#1      ------------------------------------------------------------
                                                                                  

consensus_6243#0      ACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAG 240
consensus_6243#1      ------------------------------------------------------------
                                                                                  

consensus_6243#0      GCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAA 300
consensus_6243#1      -----CGTATTTGAAGGTGAGACGGAAGC--CGAGTCGGCAGTCG-----AAGTGTTCGG 48
                           *  **   * * ** *** *** *       * *** *       ****  **  

consensus_6243#0      T-ATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGAT 359
consensus_6243#1      TGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATC 108
                      * *    **   * * ** *          *     *  *   * *    * *  **   

consensus_6243#0      GGA-TAGTGGCTAGCGGTGGAATCGG--AACGTGTGTCTGTGTTCGCTCCAGTCGAATTG 416
consensus_6243#1      GGAACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTG 168
                      ***  *   * ***    ****  **   *   * *************************

consensus_6243#0      GAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGT 476
consensus_6243#1      GAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGT 228
                      ***************************************** ******************

consensus_6243#0      GTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACG 536
consensus_6243#1      GTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCG 288
                      ****************************************************** *  **

consensus_6243#0      GAAGCCGTAGTCGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCA 596
consensus_6243#1      GCTTCCGTC-TCACCTTC-AAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCC 346
                      *   ****  ** *  ** ** *   *  *  *   *      ***        **  * 

consensus_6243#0      GAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAA 656
consensus_6243#1      ACACCTTCATT-----CTCGTGGTGGTTCCGCACTAATGCTTCGGCTTC----------- 390
                        *  *  * *       *  * **  ** * **   **  *  * *             

consensus_6243#0      TTGGAGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAA 716
consensus_6243#1      ------------------------------------------------------------
                                                                                  

consensus_6243#0      GCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA 769
consensus_6243#1      -----------------------------------------------------