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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 526 fasta sequence
[CCACCACCACCACCACAAGTTGAAATGAGAAAAAATGATCTAGAATCAGAAGTTAGACGAAGGTCATTCAGGAAACGGAAACAAACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAGACAGGATGACAGGTGTTATG---TATATATATATTTCCCTATCCTTATTATAGATGGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATCTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAACCAGCATCCTCTCTCTCTCTCTACGTTTATAACAATTGGCGACGGCA]
[+] EMBL CD090057 [CCACCACCACCACCACAAGTTGAAATGAGAAAAAATGATCTAGAATCAGAAGTTAGACGAAGGTCATTCAGGAAACGGAAACAAGCGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAGACAGGATGACAGGTGTTATG TATATATATATTTCCCTATCCTTATTATAGATTGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATTTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAACCAGCATCCTCTCTCTCTCTCTACGTTTATAACAATTGGCGACGGCA]
[+] EMBL CD146790 [ AAACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGTCAATGATTGGTTGTCTCGATGAGTCAGACATTAGAGGGGATGACAGGTGTTATGTGTTATATATATATTTCCCTATCCTTATTATGTATGG ACTTATTGAGACTTATTGACTGTTCCATGTGTCGGGTCTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAAACCCCTAAAGTT ]
[-] EMBL CD086285 [ AACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAGACAGGATGACAGGTGTTATG TATATATATATTTCCCTATCCTTATTATAGATGGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATCTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATGGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAACCAGCATCCT ]
consensusID : consensus_6245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence
[GGACTGTTATGATTGACTGTTCCTGTGTCGGATTTTGGTGTGGAAATATATTGACGTTATAGTCAGGCTAATCTTGTGTTCTTGATCTGAGTTGTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGAAATTCGTCTAAGGTAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACTAGAAACCTCTAAAGTTATAACCAGCATCCTTCCACGTTTATAACAATTAGCGACGGCATACTTACGTTTATAACAGAAAGTCACCGTCAGATAGATTGTTAATAATAATAATAATCTGCTGCGTAAATTTGCGAAGTTGATGATTTGATAACTTACGCCTTTTAACTCTCGTGGAGCGTAGACTGAAGACCACGATTCTCCAACTGAGCGACCTGGGCACTACTTTCCAGTTGTTTTGAAGTGCTGTTCATCCTTTTGATGACT]
[+] EMBL CD068671 [GGACTGTTATGATTGACTGTTCCTGTGTCGGATTTTGGTGTGGAAATATATTGACGTTATAGTCAGGCTAATCTTGTGTTCTTGATCTGAGTTGTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGAAATTCGTCTAAGGTAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACTAGAAACCTCTAAAGTTATAACCAGCATCCTTCCACGTTTATAACAATTAGCGACGGCATACTTACGTTTATAACAGAAAGTCACCGTCAGATAGATTGTTAATAATAATAATAATCTGCTGCGTAAATTTGCGAAGTTGATGATTTGATAACTTACGCCTTTTAACTCTCGTGGAGCGTAGACTGAAGACCACGATTCTCCAACTGAGCGACCTGGGCACTACTTTCCAGTTGTTTTGAAGTGCTGTTCATCCTTTTGATGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6245#0 CCACCACCACCACCACAAGTTGAAATGAGAAAAAATGATCTAGAATCAGAAGTTAGACGA 60
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 AGGTCATTCAGGAAACGGAAACAAACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCA 120
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 TACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCT 180
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 TGATGAGTCAGACATTAGACAGGATGACAGGTGTTATGTATATATATATTTCCCTATCCT 240
consensus_6245#1 ------------------------------------------------------------
consensus_6245#0 TATTATAGATGGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATCTTGGTGTG 300
consensus_6245#1 ----------GGACTGTTATG-------ATTGACTGTTCC-TGTGTCGGATTTTGGTGTG 42
**** **** ************ ********** ********
consensus_6245#0 -AAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAG 359
consensus_6245#1 GAAATATATTGACGTTATAGTCAGGCTAATCTTGTGTTCTTGATCTGAGTTGTGTTGAAG 102
***************************** ******************** ********
consensus_6245#0 TCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAAC 419
consensus_6245#1 TCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGAAATTCGTCTAAGGTAAATTAAC 162
************************************** *********** *********
consensus_6245#0 GTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAA 479
consensus_6245#1 GTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACTAGAAACCTCTAAAGTTATAA 222
*************************************** **** ** ************
consensus_6245#0 CCAGCATCCTCTCTCTCTCTCTACGTTTATAACAATTGGCGACGGCA------------- 526
consensus_6245#1 CCAGCATCCT---------TCCACGTTTATAACAATTAGCGACGGCATACTTACGTTTAT 273
********** ** *************** *********
consensus_6245#0 ------------------------------------------------------------
consensus_6245#1 AACAGAAAGTCACCGTCAGATAGATTGTTAATAATAATAATAATCTGCTGCGTAAATTTG 333
consensus_6245#0 ------------------------------------------------------------
consensus_6245#1 CGAAGTTGATGATTTGATAACTTACGCCTTTTAACTCTCGTGGAGCGTAGACTGAAGACC 393
consensus_6245#0 ------------------------------------------------------------
consensus_6245#1 ACGATTCTCCAACTGAGCGACCTGGGCACTACTTTCCAGTTGTTTTGAAGTGCTGTTCAT 453
consensus_6245#0 -------------
consensus_6245#1 CCTTTTGATGACT 466
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||