These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 285 fasta sequence [ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGAATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG] [+] EMBL CD190960 [ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGAATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG] consensusID : consensus_625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTCTACACAGTAAT] [-] EMBL CD184495 [TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTCTACACAGTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_625#0 ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGAT 60 consensus_625#1 -TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGAT 59 ****************************************************** **** consensus_625#0 CTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTA 120 consensus_625#1 CTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTA 119 ************************************************************ consensus_625#0 CTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCAT 180 consensus_625#1 CTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCAT 179 ************************************************************ consensus_625#0 TGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGA 240 consensus_625#1 TGCACGCATTTGTTGAAGTCTACACAGTAAT----------------------------- 210 ******************* * * ** consensus_625#0 ATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG 285 consensus_625#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||