cluster # 6250

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6250 cluster # 6250 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6250#0 length = 317 sequences # 1

consensus_6250#1 length = 315 sequences # 3

consensusID : consensus_6250#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAACTGAAAAAGATGTCTATT]

[+] EMBL CD139106             [TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAACTGAAAAAGATGTCTATT]




>consensus_6250#0
TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTA
TATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCA
TAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGAC
TGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGA
ATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAAC
TGAAAAAGATGTCTATT

consensusID : consensus_6250#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 315
fasta sequence

                              [TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAA-GTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT]

[+] EMBL CD139144             [TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAAGGTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT]
[+] EMBL CD139142             [TAGCACACTTCACTTCCATTGTAATACAACAACATCATTACCGAGACGAA GTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCACTTTTTCCTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT]
[+] EMBL CD139159             [TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAA GTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT]




>consensus_6250#1
TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAAGTGAAGAGTA
TATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCA
TAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGAC
TGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGA
ATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACT
GAAAAGATGTCTATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6250#0      TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTA 60
consensus_6250#1      TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAAGTGAAGAGTA 60
                      **** *   *   ************* ** ****** ************ **********

consensus_6250#0      TATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCA 120
consensus_6250#1      TATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCA 120
                      ************************************************************

consensus_6250#0      TAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGAC 180
consensus_6250#1      TAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGAC 180
                      ******************** ***************************************

consensus_6250#0      TGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGA 240
consensus_6250#1      TGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGA 240
                      ************************************************************

consensus_6250#0      ATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAAC 300
consensus_6250#1      ATAATTGAAGTGGCATTTTTTCTTAATC-ACATGGTCTCCGGAGCCAAGCATATAATAAC 299
                      **************************** *************** ***************

consensus_6250#0      TGAAAAAGATGTCTATT 317
consensus_6250#1      TGAAAA-GATGTCTATT 315
                      ****** **********