These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAACTGAAAAAGATGTCTATT] [+] EMBL CD139106 [TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAACTGAAAAAGATGTCTATT] consensusID : consensus_6250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 315 fasta sequence [TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAA-GTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT] [+] EMBL CD139144 [TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAAGGTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT] [+] EMBL CD139142 [TAGCACACTTCACTTCCATTGTAATACAACAACATCATTACCGAGACGAA GTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCACTTTTTCCTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT] [+] EMBL CD139159 [TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAA GTGAAGAGTATATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCATAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGACTGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGAATAATTGAAGTGGCATTTTTTCTTAATCACATGGTCTCCGGAGCCAAGCATATAATAACTGAAAAGATGTCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6250#0 TAGCTCTTTTTCTTTCCATTGTAATAAAAAAACATCCTTACCGAGACGAGGTGAAGAGTA 60 consensus_6250#1 TAGCACACATAACTTCCATTGTAATACAACAACATCATTACCGAGACGAAGTGAAGAGTA 60 **** * * ************* ** ****** ************ ********** consensus_6250#0 TATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCA 120 consensus_6250#1 TATACGGATTCAAAGAACTCAAACAACAGATAGTTGAAAAATATGGTGAACACTTCGCCA 120 ************************************************************ consensus_6250#0 TAATGGTGGAGAAGAAAGTACGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGAC 180 consensus_6250#1 TAATGGTGGAGAAGAAAGTAAGCAATTTTTACTTAAGAATCATCAATAACTAGGTAAGAC 180 ******************** *************************************** consensus_6250#0 TGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGA 240 consensus_6250#1 TGCAATTTCTCTAACATTTCTCGTCGTGCAGTCCTATTAACGACCAGTATATTCGGATGA 240 ************************************************************ consensus_6250#0 ATAATTGAAGTGGCATTTTTTCTTAATCCACATGGTCTCCGGAGGCAAGCATATAATAAC 300 consensus_6250#1 ATAATTGAAGTGGCATTTTTTCTTAATC-ACATGGTCTCCGGAGCCAAGCATATAATAAC 299 **************************** *************** *************** consensus_6250#0 TGAAAAAGATGTCTATT 317 consensus_6250#1 TGAAAA-GATGTCTATT 315 ****** ********** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||