cluster # 6253

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Schistosoma mansoni
cluster # 6253 cluster # 6253 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6253#0 length = 483 sequences # 3

consensus_6253#1 length = 364 sequences # 1

consensusID : consensus_6253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 483
fasta sequence

                              [CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACAATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCAAGT]

[-] EMBL CD181314             [CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACAATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACC                                                                                                                                                                                                                           ]
[+] EMBL CD064065             [                               gacgACATTCACGCGGAGTACACTTAACAATCAGA  GGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGAT                                                                                                                                                  ]
[+] EMBL CD190754             [                                           GCGGAGTACACTTAACAATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAAAAGGCCAACCAACATAATTCAATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCAAGT]




>consensus_6253#0
CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACA
ATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTC
AATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCT
GCAAGATACATTTTGCAATCATAACCAAAACAGTTTTTACTTCGACTACGTCGACATCCG
TCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAA
GATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTC
ACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTAC
CAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCA
AGT

consensusID : consensus_6253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACTAAGTATAGAGTTATAATGCAAATCCAACTCACCCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCC]

[-] EMBL CD155314             [GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCATAACTAAGTATAGAGTTATAATGCAAATCCAACTCACCCAAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGTTCCC]




>consensus_6253#1
GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCTGCAAGATACATTTTGCAATCAT
AACTAAGTATAGAGTTATAATGCAAATCCAACTCACCCAAAACAGTTTTTACTTCGACTA
CGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTTGCAAAACTCAGGGTCTGCCGTC
AGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTGGTTCCGTCGATTGGTGTGTGTT
GAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTGCTTGAGCTTTACCTTGATGATA
AGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAATCTTTGTGTAGAACCTAAGTAGT
TCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6253#0      CAACAATGATGCGCGTATATCCAACCNCCTTCTTCACCTTCACGCGGAGTACACTTAACA 60
consensus_6253#1      ------------------------------------------------------------
                                                                                  

consensus_6253#0      ATCAGATTGGAAACTTTTAAGGTATCTTCATCAGGTTTAGAAGGCCAACCAACATAATTC 120
consensus_6253#1      ------------------------------------------------------------
                                                                                  

consensus_6253#0      AATTCTTCCACTAAACCAAATGGTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCT 180
consensus_6253#1      ----------------------GTCGGCCATTACAATCGAAATAAGCATTTGGCATCCCT 38
                                            **************************************

consensus_6253#0      GCAAGATACATTTTGCAATCATAAC----------------------------------C 206
consensus_6253#1      GCAAGATACATTTTGCAATCATAACTAAGTATAGAGTTATAATGCAAATCCAACTCACCC 98
                      *************************                                  *

consensus_6253#0      AAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTT 266
consensus_6253#1      AAAACAGTTTTTACTTCGACTACGTCGACATCCGTCTAGAGACGTGTGTGGGCCTACCTT 158
                      ************************************************************

consensus_6253#0      GCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTG 326
consensus_6253#1      GCAAAACTCAGGGTCTGCCGTCAGAGGTGTGAAAGATGCCACAACAATCTTGCTATGCTG 218
                      ************************************************************

consensus_6253#0      GTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTG 386
consensus_6253#1      GTTCCGTCGATTGGTGTGTGTTGAACGGTTTGTCACCAAAATATTTGTACACTTTTCCTG 278
                      ************************************************************

consensus_6253#0      CTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAAT 446
consensus_6253#1      CTTGAGCTTTACCTTGATGATAAGGTCACTGTACCAAGTAGGGGGTTCTGAGTATTCAAT 338
                      ************************************************************

consensus_6253#0      CTTTGTGTAGAACCTAAGTAGTTCCCCCTGTCCAAGT 483
consensus_6253#1      CTTTGTGTAGAACCTAAGTAGTTCCC----------- 364
                      **************************