These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6256#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTAGTGATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATGCTTTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACATCTAGAT] [+] EMBL AI067440 [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTAGTGATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATGCTTTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACATCTAGAT] consensusID : consensus_6256#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAAT] [-] EMBL CD189929 [ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAAT] consensusID : consensus_6256#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAA] [+] EMBL CD189918 [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAA] consensusID : consensus_6256#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [GCGCTTCCTCGGACTTTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAGACAATTGAATCTTTACGAAATGTTTTACTACAA] [+] EMBL CD189731 [GCGCTTCCTCGGACTTTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAGACAATTGAATCTTTACGAAATGTTTTACTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6256#0 ---------------------------------------TCCTCGGACTTGTTTGTTACT 21 consensus_6256#3 ------------------------------------------------------------ consensus_6256#1 ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACT 60 consensus_6256#2 ---------------------------------------TCCTCGGACTTGTTTGTTACT 21 consensus_6256#0 GTATTTTCCCTTAAGTGCTATAAC-------------------GTTTTAGGCTTAATTTA 62 consensus_6256#3 --GCGCTTCCTCGGAC-------T-------------------TTTTTAGGCTTAATTTA 32 consensus_6256#1 GTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTA 120 consensus_6256#2 GTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTA 81 * *** **************** consensus_6256#0 AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 122 consensus_6256#3 AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 92 consensus_6256#1 AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 180 consensus_6256#2 AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 141 ************************************************************ consensus_6256#0 GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCA 182 consensus_6256#3 GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCA 152 consensus_6256#1 GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCA 240 consensus_6256#2 GTTAATTATAAACCATTACTTGATCAAAAT------------------------------ 171 ****************************** consensus_6256#0 AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 242 consensus_6256#3 AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 212 consensus_6256#1 AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 300 consensus_6256#2 -------------------AATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 212 ***************************************** consensus_6256#0 CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT 302 consensus_6256#3 CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAGACAATTGAATCT 272 consensus_6256#1 CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT 360 consensus_6256#2 CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT 272 *********************************************** ************ consensus_6256#0 TTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTAGT 362 consensus_6256#3 TTACGAAATGTTTTACTACAA--------------------------------------- 293 consensus_6256#1 TTACGAAATGTTTTACTACAAT-------------------------------------- 382 consensus_6256#2 TTACGAAATGTTTTACTACAA--------------------------------------- 293 ********************* consensus_6256#0 GATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATGCT 422 consensus_6256#3 ------------------------------------------------------------ consensus_6256#1 ------------------------------------------------------------ consensus_6256#2 ------------------------------------------------------------ consensus_6256#0 TTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACATCT 482 consensus_6256#3 ------------------------------------------------------------ consensus_6256#1 ------------------------------------------------------------ consensus_6256#2 ------------------------------------------------------------ consensus_6256#0 AGAT 486 consensus_6256#3 ---- consensus_6256#1 ---- consensus_6256#2 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||