cluster # 6257

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Schistosoma mansoni
cluster # 6257 cluster # 6257 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6257#0 length = 471 sequences # 3

consensus_6257#1 length = 202 sequences # 1

consensusID : consensus_6257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 471
fasta sequence

                              [GGATATTGGACGCGGGTATTCCCAGTCTGCATCTCTGCGACATCCATGTCCACGGAATTGCAAAGAAAACTTTCTTTACGTTTTAATGCACTTCTACATTATCTTCCAGAAGCCTTTCGTTGGTACAGCTTGTAGAAGGTAATATAGTTGAAGGAATCTCATGACAATTACTTTCTCTGTCAACTGTAGTTGTGCTTTCAATAGCAAAGTTACTAAACGAAAGCAAGTCATGTCTCCTCAGAAAATCAGTCTTCAGTCTTCAGTAATAAGGATAGAAGGTCTAGTGACCTATTTTAATCCTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAATGTCCT]

[+] EMBL CD148031             [GGATATTGGACGCGGGTATTCCCAGTCTGCATCTCTGCGACATCCATGTCCACGGAATTGCAAAGAAAACTTTCTTTACGTTTTAATGCACTTCTACATTATCTTCCAGAAGCCTTTCGTTGG ACAGCTTGTAGAAGGTAATATAGTTGAAGGAATCTCATGACAATTACTTTCTCTGTCAACTGTAGTTGTGCTTTCAATAGCAAAGTTACTAAACGAAAGCATGTCATGTCTCCTCAGAAAATCAGTCTTCAGTCTTCAGTAATAAGGATAGAAGGTCTAGTGACCTATTTTAATCCTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAATGTCCT]
[-] EMBL CD192529             [                                                      GAATTGCAAAGAAAACTTTCTTTACGTTTTAATGCACTTCTACATTATCTTCCAGAAGCCTTTCGTTGGTACAGCTTGTAGAAGGTAATATAGTTGAAGGAATCTCATGACAATTACTTTCTCTGTCAACTGTAGTTGTGCTTTCAATAGCAAAGTTACTAAACGAAAGCAAGTCATGTCTCCTCAGAAAATCAGTCTTCAG                                                                                                                                                                                                                       ]
[-] EMBL CD192254             [                                                      GAATTGCAAAGAAAACTTTCTTTACGTTTTAATGCACTTCTACATTATCTTCCAGAAGCCTTTCGTTGGTACAGCTTGTAGAAGGTAATATAGTTGAAGGAATCTCATGACAATTACTTTCTCTGTCAACTGTAGTTGTGCTTTCAATAGCAAAGTTACTAAACGAAAGCAAGTCATGTCTCCTCAGAAAATCAGTCTTCAG                                                                                                                                                                                                                       ]




>consensus_6257#0
GGATATTGGACGCGGGTATTCCCAGTCTGCATCTCTGCGACATCCATGTCCACGGAATTG
CAAAGAAAACTTTCTTTACGTTTTAATGCACTTCTACATTATCTTCCAGAAGCCTTTCGT
TGGTACAGCTTGTAGAAGGTAATATAGTTGAAGGAATCTCATGACAATTACTTTCTCTGT
CAACTGTAGTTGTGCTTTCAATAGCAAAGTTACTAAACGAAAGCAAGTCATGTCTCCTCA
GAAAATCAGTCTTCAGTCTTCAGTAATAAGGATAGAAGGTCTAGTGACCTATTTTAATCC
TTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGCT
GATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAAC
TCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAATGTCCT

consensusID : consensus_6257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 202
fasta sequence

                              [TTCATATTGAAATCAATCGGTTACCGTGAATGAATATAATATGAGAAATAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAAC]

[+] EMBL CD077823             [TTCATATTGAAATCAATCGGTTACCGTGAATGAATATAATATGAGAAATAGATGTACTGAACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAGTATGGCATCCCTGATAACAAAC]




>consensus_6257#1
TTCATATTGAAATCAATCGGTTACCGTGAATGAATATAATATGAGAAATAGATGTACTGA
ACATTCAGTGGATTATTCTCCGTATTCAAAACAACATTAATCACAATCAACAACAGTAAC
AATGATCATTGAACTACGTCGTTTGGGTGTTAGTCTATTATGCTTAGCAGTGGGTTTGAG
TATGGCATCCCTGATAACAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6257#0      GGATATTGGACGCGGGTATTCCCAGTCTGCATCTCTGCGACATCCATGTCCACGGAATTG 60
consensus_6257#1      ------------------------------------------------------------
                                                                                  

consensus_6257#0      CAAAGAAAACTTTCTTTACGTTTTAATGCACTTCTACATTATCTTCCAGAAGCCTTTCGT 120
consensus_6257#1      --------------------------------TTCATATTGAAATC-AATCGGTTACCGT 27
                                                      *  * ***    ** *   *  *  ***

consensus_6257#0      TGGTACAGCTTGTAGAAGGTAATATAGTTGAAGGAATCTCATGACAATTACTTTCTCTGT 180
consensus_6257#1      GAATGAATATAATATGAGA-AATAGATGTACTGAACATTCA-GTGGATTATTCTCCGTAT 85
                         *  *  *  **  **  **** *  *   * *   *** *   **** * **  * *

consensus_6257#0      CAACTGTAGTTGTGCTTTCAAT-AGCAAAGTTACTAAACGAAAGCAAGTCATGTCTCCTC 239
consensus_6257#1      TCAAAACAACATTAATCACAATCAACAACAGTAACAATGATCATTGAACTACGTCGTTT- 144
                        *    *    *  *  **** * ***   **  **     *   *   * ***   * 

consensus_6257#0      AGAAAATCAGTCTTCAGTCTTCAGTAATAAGGATAGAAGGTCTAGTGACCTATTTTAATC 299
consensus_6257#1      -GGGTGTTAGTCTATTATGCTTAGCAGTG-GGTTTGAGTATGGCATCCCTGATAACAAAC 202
                       *    * *****    *  * ** * *  ** * **   *    *  *  **   ** *

consensus_6257#0      CTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGC 359
consensus_6257#1      ------------------------------------------------------------
                                                                                  

consensus_6257#0      TGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAA 419
consensus_6257#1      ------------------------------------------------------------
                                                                                  

consensus_6257#0      CTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAATGTCCT 471
consensus_6257#1      ----------------------------------------------------