These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6259#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGGGGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAGTGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCCTGTACCGATCAATAGTGCGATGTGGGGACGGAGAAGGTTAGCTCAGCCAACTGTTGGATATGTTGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA] [+] EMBL CD084634 [GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGGGGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAGTGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCCTGTACCGATCAATAGTGCGATGTGGGGACGGAGAAGGTTAGCTCAGCCAACTGTTGGATATGTTGGTTCAAGCCTGTAGTCGTGCCTGGTAGGCAAATCCGCCGGGCTTAGATGAGGGGTGATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGACACTGGTGCGCGAGATGAGTATTCTAAGGCGCTTGAGAGAACTCA] consensusID : consensus_6259#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 376 fasta sequence [NNNNNNNNNNNNTTTTAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTTTTAAAACTTCCCTTTCCCCCCCTTCCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCGTCCCTCTCGGAGAAGA] [+] EMBL AI394793 [NNNNNNNNNNNNTTTTAAATAAATAATTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTATTATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTTTTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTTCTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTGGTTCTTCTGGATGTGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTTTTAAAACTTCCCTTTCCCCCCCTTCCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCGTCCCTCTCGGAGAAGA] consensusID : consensus_6259#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTCCATCGCCGAACCAACACCACCGGCTACGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCAGTGCCAATGGTGCTTGAGATTCTCCGAGAAATCGCAGTGGACGCAAACGGGTGCATTCGATTCCACCGCCCTATAATGACGTTCGTAATCGTACTTCCAAGGCCAAGGCTGAAGCCGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAAAA] [+] EMBL CD161610 [TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTCCATCGCCGAACCAACACCACCGGCTACGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCAGTGCCAATGGTGCTTGAGATTCTCCGAGAAATCGCAGTGGACGCAAACGGGTGCATTCGATTCCACCGCCCTATAATGACGTTCGTAATCGTACTTCCAAGGCCAAGGCTGAAGCCGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAAAA] consensusID : consensus_6259#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [AAGGTTAGCTCAGCCAACTGTTGGAATAGTTGGTTCAAGCGTGTAGTCGTGCTCTTTAGGCAAATCCGGAGAGCTAAGATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGAC] [-] EMBL CD087382 [AAGGTTAGCTCAGCCAACTGTTGGAATAGTTGGTTCAAGCGTGTAGTCGTGCTCTTTAGGCAAATCCGGAGAGCTAAGATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGATACCCTGCTTCCAGGAAAAGCCACTAAGCTTCAGCTATTGACGACCGTACCGCAAACCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6259#0 GAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGTTAAAGGG 60 consensus_6259#3 ------------------------------------------------------------ consensus_6259#2 ------------------------------------------------------------ consensus_6259#1 ------------------------------------------------------------ consensus_6259#0 GGTGAAAAGCCCCCTCGCCGTAAGCGCAAGGTTTTCTACGCAACGTTCATCGGCGTAGAG 120 consensus_6259#3 ------------------------------------------------------------ consensus_6259#2 ------------------------------------------------------------ consensus_6259#1 ----------------------------------NNNNNNNNNNNNTTTTAAATAAATAA 26 consensus_6259#0 TGAGTCGGCCCCTAAGGCGAGGCAGAGATGCGTAGCTGATGGGAAACAGGTCAATATTCC 180 consensus_6259#3 ------------------------------------------------------------ consensus_6259#2 -TACACGTCGCTCGCTCACATGTATAGATACAACTACACCTCTTCACAGCCCACTCTCTC 59 consensus_6259#1 TTTGTATTTATTAAATGTAATGTATAAATAGGGTTATGTTATTACCATTATTATTATTAT 86 consensus_6259#0 TGT-ACCGATCAATAGTGCGATGTGGGGACGGAGA----AGGTTAGC--TCAGCCAACTG 233 consensus_6259#3 ----------------------------------A----AGGTTAGC--TCAGCCAACTG 20 consensus_6259#2 CATCGCCGAACCAACACCACCGGCTACGCTCCTGA----AACTCATCAACCAACCA-CTC 114 consensus_6259#1 TATTATTATAACAGTTCACTTGTATAAACAGTTCATATTAGTTTAATATAAAGATCATTT 146 * * * * * * consensus_6259#0 TTGGATATGTTGGTTCAAGCCT-GTAGTCGTGCCTGGTAGGCAA-ATC-CGCCGGGCTTA 290 consensus_6259#3 TTGGAATAGTTGGTTCAAGCGT-GTAGTCGTGCTCTTTAGGCAA-ATC-CGGAGAGCTAA 77 consensus_6259#2 TTGTCGCCGCCAGTGCCAATG--GTGCTTGAGATTCTCCGAGAA-ATCGCAGTGGACGCA 171 consensus_6259#1 TTCATGTTGTTTGCATTTGTATTTTATTCACCTATGTTTACCAATATCACTGTTCGTTTT 206 ** * * * * ** *** * consensus_6259#0 GATGAGGGGTGATAACGAGTCTGCTTGCAGACGAAGTGAGTGATACCCTGCTTCCAGGAA 350 consensus_6259#3 GATGAGGCGTGATAACGAGTGCGCTTGCACACGAAGTGAGTGATACCCTGCTTCCAGGAA 137 consensus_6259#2 AACGGGTGCATTCGATTCCACCGCCCTATAATGACGTTCGTAAT--CGTACTTCCAAGGC 229 consensus_6259#1 CTTCATCTTCTCCGTCGTCTTCGCCATGTTGTGGTATAGTTTGTG--GTTCTTCTGGATG 264 ** * * * * * **** consensus_6259#0 AAGCCACTAAGC-TTCAGCTATTGACGACCGTACCG-CAAACCGACACTGGTGCGCGAGA 408 consensus_6259#3 AAGCCACTAAGC-TTCAGCTATTGACGACCGTACCG-CAAACCGAC-------------- 181 consensus_6259#2 CAAGGCTGAAGC-CGCTTCAAATAGCGATGAAGAAGACCAACCTGCAGTTGAATCTCAAA 288 consensus_6259#1 TGGTGTTGGGGTGTGGTTGTACCAATTCCAAAATTTTTAAAACTTCCCTTTCCCCCCCTT 324 * * ** * * consensus_6259#0 TGAGTATTCTAAGGCGCTTGAGAGAACTCA---------------------- 438 consensus_6259#3 ---------------------------------------------------- consensus_6259#2 AA-------------------------------------------------- 290 consensus_6259#1 CCCTTCGCGTCCCTTCCGTCCCTGGGGCCCCTCGCGTCCCTCTCGGAGAAGA 376 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||