cluster # 6277

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Schistosoma mansoni
cluster # 6277 cluster # 6277 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6277#0 length = 668 sequences # 3

consensus_6277#1 length = 601 sequences # 1

consensusID : consensus_6277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 668
fasta sequence

                              [GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAATTAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACATCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTTACAATCATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTATGGTTATAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTCAAATCTTGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGATACCAAGATTTTCG]

[+] EMBL AI067258             [GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAATTAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACATCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTTACAATCATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTATGGTTATAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTCAAATCTTGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGATACCAAGATTTTCG]
[+] EMBL AI067777             [GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAATTAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACATCACGTGCATAAATTTGAAAATATTACATTTA                                                                                                                                                                                                                        ]
[+] EMBL AI067127             [      ATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATATCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACA                                                                                                                                                                                                                                                                                                                                ]




>consensus_6277#0
GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTTGTAACTGACTGCAAAATATA
TCGTATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCAAGA
ACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATCTGA
AAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAATATA
CCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTGCGA
AAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATTACACAAGAAAAGAAT
TAGGATCCTTATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTACAGTACA
TCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTTACAATC
ATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTATGGTTA
TAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTCAAATCT
TGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGATACCAA
GATTTTCG

consensusID : consensus_6277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTACCATCATCATCCTATCACTACAGGTACATAACCAAGTTTGAAGCGGAAAACTTTTATCGTTTGGTGAGAACTGATCATTGACGGGAATGTTTATGTGCTGTGTAGTGTGCATTTCTTCGACCAAACTTTCAACACGAACGAAGATACTACACTGAACATATTCCTCTAATATATTAAAACTTCGTATTTTTTTATTGTTGCCCATTTTATTTACATTTTGCTCATTACTCTAAATTGTGTCACATACAATTACTTAGGACATATTAAGCAAATCAGAAAATTCTACGGATACCAAGATTTTCGACACTACTGAGGAAAATAATCCTGATCTGATTCAGCTAATAGATATTAGCGACAACACTGTTTCATCTAACCAAAATAGCACTGACAATGGAAACATTCAAAAACAATACACAAGTAATGGACACAACGTTCCGTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATGATCATTTCGAATACCAAGGGACTAACTGGGCAAACTCTACACCTACAAATTTAATGTCTCANAATCTTCC]

[+] EMBL CD124692             [TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTACCATCATCATCCTATCACTACAGGTACATAACCAAGTTTGAAGCGGAAAACTTTTATCGTTTGGTGAGAACTGATCATTGACGGGAATGTTTATGTGCTGTGTAGTGTGCATTTCTTCGACCAAACTTTCAACACGAACGAAGATACTACACTGAACATATTCCTCTAATATATTAAAACTTCGTATTTTTTTATTGTTGCCCATTTTATTTACATTTTGCTCATTACTCTAAATTGTGTCACATACAATTACTTAGGACATATTAAGCAAATCAGAAAATTCTACGGATACCAAGATTTTCGACACTACTGAGGAAAATAATCCTGATCTGATTCAGCTAATAGATATTAGCGACAACACTGTTTCATCTAACCAAAATAGCACTGACAATGGAAACATTCAAAAACAATACACAAGTAATGGACACAACGTTCCGTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATGATCATTTCGAATACCAAGGGACTAACTGGGCAAACTCTACACCTACAAATTTAATGTCTCANAATCTTCC]




>consensus_6277#1
TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTACCATCA
TCATCCTATCACTACAGGTACATAACCAAGTTTGAAGCGGAAAACTTTTATCGTTTGGTG
AGAACTGATCATTGACGGGAATGTTTATGTGCTGTGTAGTGTGCATTTCTTCGACCAAAC
TTTCAACACGAACGAAGATACTACACTGAACATATTCCTCTAATATATTAAAACTTCGTA
TTTTTTTATTGTTGCCCATTTTATTTACATTTTGCTCATTACTCTAAATTGTGTCACATA
CAATTACTTAGGACATATTAAGCAAATCAGAAAATTCTACGGATACCAAGATTTTCGACA
CTACTGAGGAAAATAATCCTGATCTGATTCAGCTAATAGATATTAGCGACAACACTGTTT
CATCTAACCAAAATAGCACTGACAATGGAAACATTCAAAAACAATACACAAGTAATGGAC
ACAACGTTCCGTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATGATCATTTCG
AATACCAAGGGACTAACTGGGCAAACTCTACACCTACAAATTTAATGTCTCANAATCTTC
C

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6277#0      GGAGTTATGCTCCAACAAATTGTCCTCGTCACCAAAGTTT--GTAACTGACTGCAAAATA 58
consensus_6277#1      ----TTTCATTATCTTTAAGTTTTTTAGACACTAAGTTTATGATAATAGAATTTGTTAC- 55
                          **    *      ** * *  * * *** **  **    ***  ** *     *  

consensus_6277#0      TATCGT-ATCTTATTTTTATAGGAAACATAGGTGATTCCAAAACAAAATAAAATGACTCA 117
consensus_6277#1      CATCATCATCCTATCACTACAGGTA-CATAACCAAGTTTGAAGCGGAAAACTTTTATCGT 114
                       *** * *** ***   ** *** * ****    * *   ** *  ** *   * *    

consensus_6277#0      AGAACATGAAAGAATGAATCCTTTAGATATAGATGAAATAGAAGTCAGTTCGGATACATC 177
consensus_6277#1      TTGGTGAGAACTGATCATTGACGGGAATGTTTATGTGCTGTG---TAGTGTGCATTTCTT 171
                             ***   ** * *       ** *  ***   *       ***  * **   * 

consensus_6277#0      TGAAAAGGAGGACAAAGAATCCAAAACACATGGTTCATTGGAAAAATTTGTCCCACAAAT 237
consensus_6277#1      CGACCAAACTTTCAACA---CGAACGAAGATACTACACTGAACATATT----CCTCTAAT 224
                       **  *      ***     * **   * **  * ** ** * * ***    ** * ***

consensus_6277#0      ATACCGTGCTAAATTCTTCGGAAATACCTCCGTCTCTGAGCCTCGTGGTGATTTTATTTG 297
consensus_6277#1      ATATT------AAAACTTCG----TATTTTTTTATTGTTGCCC-------ATTTTATTTA 267
                      ***        **  *****    **  *   * *    ***        ********* 

consensus_6277#0      CGAAAGATCACTCGGATTACTTAAAACTCAGTTGCTTACATCAAAATT--ACACAAGAAA 355
consensus_6277#1      C---ATTTTGCTC--ATTACTCTAAATTGTGTCACATACAATTACTTAGGACATATTAAG 322
                      *   *  *  ***  ******  *** *  **  * ****   *  *   *** *  ** 

consensus_6277#0      AGAATTAGGATCCT-TATAGACACCAGTGGGATTAGTGTTATTAGCTCACGAAATTCTAC 414
consensus_6277#1      CAAATCAGAAAATTCTACGGATACCAAGATTTTCGACACTACTGAGGAAAATAATCCTGA 382
                        *** ** *   * **  ** ****      *      ** *     *   *** **  

consensus_6277#0      AGTACATCACGTGCATAAATTTGAAAATATTACATTTATTTGGATTGACCCCTGTGATTT 474
consensus_6277#1      TCTGATTCAGCTA-ATAGATATTAGCG-ACAACACT-GTTTCATCTAACCAAAATAGC-- 437
                        *   ***  *  *** ** * *    *  *** *  ***    * ***    *     

consensus_6277#0      ACAATCATGTGGAATTATAGTGAAACAAACATTAATTGGGGATAATGTTCATCAATTTTA 534
consensus_6277#1      ACTGACA-ATGGAAACATTCAAAAACAATACACAA------GTAATGGACACAACGTTCC 490
                      **   **  *****  **    ******     **       *****  **  *  **  

consensus_6277#0      TGGTTATAAACTTTATCAAAATACTCAGAAATTGATTGGCGTGTTAAAGCACATCTACTC 594
consensus_6277#1      GTGCAGTAAAGATGGTGAAAAAAACTGGATAACTTTCGATG-ATCATTTCGAA--TACCA 547
                        *   ****  *  * **** *    ** *    * *  *  * *   *  *  ***  

consensus_6277#0      AAATCTTGAGTTAATACCACCTAATGAAGACATATTAAGCANATCAGAAAATTCTACGGA 654
consensus_6277#1      AGGGACTAACTGGGCAA-ACTCTACACCTACAAATTTAATGTCTCANAATCTTCC----- 601
                      *     * * *    *  **   *     *** *** *     *** **  ***      

consensus_6277#0      TACCAAGATTTTCG 668
consensus_6277#1      --------------