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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 878 fasta sequence
[AGGCCANAATTTGGCACGAGGTCAAGAGTGACCTTCGTTTTCAGTTGATAAGTTTTATGAATGATTCTGTAAATTTTAACGAATGTCAAATCACAGTTCTGATGAAAGAATTTCGTGACGATTAGGCAAATCTGAAGGTGTTACTTGTTACAGATTGACGCCAATCGATGTACCATTAAAATACAGGAACCTTAAATAGCTGTCTCACCTTAGTGCTGTACTCCTTTGTGGCATGCACTAAAAGTCCTGGTTGCGGTTACTAGCCTAATTTAGAACATACATTGAGGAAATTACCGAACTGCATCATGAAGCAAGCGTTAACTTGGAATCCGGAAGGGAATCGGAAAAGAGGAAGGCAAAGAACACATTACGCCAGGAAATGGAAACAGGTATGAAAATGATGAATAACAACTGTAAAGAACTGGAAAGGATTGCCCAGGACGGGTTTGAATGGAGAGTGCTGGTGGGTGGCTTATGTTCCTGCACTAGGGGTAACAGACGTAAGTAAGTTTACTACGACTATTCAGTTATATAACATTCAATTCAATAACACTAGGAAACACGCAATCCTCTTTAGGTCGATCATTCGAGGAAAATACGAAGAAAGCACAGAAAAAAGCAGAGAATGCAACTCGAAGAACTAACAGAGAAAAAGGTGTGTCCAGGAATAAGAGAAACGATTTGAACTTGAAGCANAGCATGGGAATTATTANTAGAAGAGAAATACNNNACAGTCAGTGACAACGCTATGAAGGTCTTTNCTACTTNCATATGGTGGCAAGTCACAAATATGGTAACGTAGTCGAAGTATTCGACAGAGTAAAATGGAATTAAAAACGANGTCAGCGAGGGATCTCTTTCACGAAATATATCATGTG]
[+] EMBL CD081151 [AGGCCANAATTTGGCACGAGGTCAAGAGTGACCTTCGTTTTCAGTTGATAAGTTTTATGAATGATTCTGTAAATTTTAACGAATGTCAAATCACAGTTCTGATGAAAGAATTTCGTGACGATTAGGCAAATCTGAAGGTGTTACTTGTTACAGATTGACGCCAATCGATGTACCATTAAAATACAGGAACCTTAAATAGCTGTCTCACCTTAGTGCTGTACTCCTTTGTGGCATGCACTAAAAGTCCTGGTTGCGGTTACTAGCCTAATTTAGAACATACATTGAGGAAATTACCGAACTGCATCATGAAGCAAGCGTTAACTTGGAATCCGGAAGGGAATCGGAAAAGAGGAAGGCAAAGAACACATTACGCCAGGAAATGGAAACAGGTATGAAAATGATGAATAACAACTGTAAAGAACTGGAAAGGATTGCCCAGGACGGGTTTGAATGGAGAGTGCTGGTGGGTGGCTTATGTTCCTGCACTAGGGGTAACAGACGTAAGTAAGTTTACTACGACTATTCAGTTATATAACATTCAATTCAATAACACTAGGAAACACGCAATCCTCTTTAGGTCGATCATTCGAGGAAAATACGAAGAAAGCACAGAAAAAAGCAGAGAATGCAACTCGAAGAACTAACAGAGAAAAAGGTGTGTCCAGGAATAAGAGAAACGATTTGAACTTGAAGCANAGCATGGGAATTATTANTAGAAGAGAAATACNNNACAGTCAGTGACAACGCTATGAAGGTCTTTNCTACTTNCATATGGTGGCAAGTCACAAATATGGTAACGTAGTCGAAGTATTCGACAGAGTAAAATGGAATTAAAAACGANGTCAGCGAGGGATCTCTTTCACGAAATATATCATGTG]
consensusID : consensus_6278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence
[GGACAAGTAGCTACTGAAGACATTGGTGGATGTTTCGCTCAATTTCGTGGCTTGGTTGCTGTTGGACATTAATACCGTTGGATGCCGGCTCAGTGGTTTAGTGGTTAAGCGCTCGCACTCGAGACCGATAGACTCCGGGTTCGAATCTCCCCAGGCGGGATCGTGGATGCGCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCAGTCAAACAGTGCTTCCAGGTTTTCCATGGTGGTTTAGCCTCAATTGATTCATGATCTCGACTATCAAATTTTCTATTGTACTTTGCCTTCACATTTGATTCATTAGTATTTGATATTGATGACATGAATGAAATGCCCCCCTCCTTTTTTTTTCTTATAAGATTATATGTATCTGTTTATCATTCATAAGTACGAACCTTTTTTGATAATCATATTGATTTTTATTCTGTCAATCTAAACAGTATACATATTTATTTTCTTTTTGGTTTACTTCAATTTTAGAACATTTAACTGTACGTATAACACTCATTAATCCTATGCGTATTCCATTAGTTTTCACTAATGTTCATTTATTATGGATATTTAATTTGACAAATTCCATTACAGAATCATCATCTTGTATAGTGAATACAATGGACTCNAATGTTANNNTATATNNATATANNTATATCCATCTTCTCATAAATCATATAATAATGATCAATTCATTCATANTACANATGAAATNCTATCTCATTCCATTTATTNCTATTCTCATGATCAGTATGAAATGATTAATCANNTTGTTNCTGGTGAANTATNANNNTGATTATATTGTACCCAGAGACGAAAAATGTAA]
[+] EMBL CD082177 [GGACAAGTAGCTACTGAAGACATTGGTGGATGTTTCGCTCAATTTCGTGGCTTGGTTGCTGTTGGACATTAATACCGTTGGATGCCGGCTCAGTGGTTTAGTGGTTAAGCGCTCGCACTCGAGACCGATAGACTCCGGGTTCGAATCTCCCCAGGCGGGATCGTGGATGCGCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCAGTCAAACAGTGCTTCCAGGTTTTCCATGGTGGTTTAGCCTCAATTGATTCATGATCTCGACTATCAAATTTTCTATTGTACTTTGCCTTCACATTTGATTCATTAGTATTTGATATTGATGACATGAATGAAATGCCCCCCTCCTTTTTTTTTCTTATAAGATTATATGTATCTGTTTATCATTCATAAGTACGAACCTTTTTTGATAATCATATTGATTTTTATTCTGTCAATCTAAACAGTATACATATTTATTTTCTTTTTGGTTTACTTCAATTTTAGAACATTTAACTGTACGTATAACACTCATTAATCCTATGCGTATTCCATTAGTTTTCACTAATGTTCATTTATTATGGATATTTAATTTGACAAATTCCATTACAGAATCATCATCTTGTATAGTGAATACAATGGACTCNAATGTTANNNTATATNNATATANNTATATCCATCTTCTCATAAATCATATAATAATGATCAATTCATTCATANTACANATGAAATNCTATCTCATTCCATTTATTNCTATTCTCATGATCAGTATGAAATGATTAATCANNTTGTTNCTGGTGAANTATNANNNTGATTATATTGTACCCAGAGACGAAAAATGTAA]
consensusID : consensus_6278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[AATTTACATTTTTTCGTTCTCCTGGTAACATAATAAATTCATTTATAATTTCACCAGAAACAAATTGATTAATCATTTCATACTGATCATGAGAATAAGAATAAATGGAATGAGATAGAATTTCATTTGTTATATGAATGAATTGATCATTATTTATATGATTATGAGAAGATGGATTATTATTATTATTATTATTATTAACATTTGAGTCCATTGTATTCACTATACAAGATGATGATTCTGTAATGGAATTTGTCAAATTAAATATCCATAATAAATGAACATTAGTGAAAACTAATGGAATACGCATAGGATTAATGAGTGTTATACGTACAGTTAAATGTTCTAAAATTGAAGTAAACCAAAAAGAAAATAAATATGTATACTGTTTAGATTGACAGAATAAAAATCAATATGATTATCAAAAAAGGTTCGTACTTATGAATGATAAACAGATACATATAATCTTATAAGAAAAANAAGNGANGGGGGGGCATTTCATTCATGTCATCAATATCAAATACTAATGAATCAAATGTGAAGGCAAAGTACAATAGAAAATTTGATAGTCGAGATCATGAA]
[+] EMBL CD075793 [AATTTACATTTTTTCGTTCTCCTGGTAACATAATAAATTCATTTATAATTTCACCAGAAACAAATTGATTAATCATTTCATACTGATCATGAGAATAAGAATAAATGGAATGAGATAGAATTTCATTTGTTATATGAATGAATTGATCATTATTTATATGATTATGAGAAGATGGATTATTATTATTATTATTATTATTAACATTTGAGTCCATTGTATTCACTATACAAGATGATGATTCTGTAATGGAATTTGTCAAATTAAATATCCATAATAAATGAACATTAGTGAAAACTAATGGAATACGCATAGGATTAATGAGTGTTATACGTACAGTTAAATGTTCTAAAATTGAAGTAAACCAAAAAGAAAATAAATATGTATACTGTTTAGATTGACAGAATAAAAATCAATATGATTATCAAAAAAGGTTCGTACTTATGAATGATAAACAGATACATATAATCTTATAAGAAAAANAAGNGANGGGGGGGCATTTCATTCATGTCATCAATATCAAATACTAATGAATCAAATGTGAAGGCAAAGTACAATAGAAAATTTGATAGTCGAGATCATGAA]
consensusID : consensus_6278#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence
[GGATTTATTTGATGACTTCAAACGTATGAACAAAAGACAGGTATACTATCAGCGTGTTAACCATTGGCTATGGTTGTAGCCTCTGCCCTAATGATCTGGAAGCTTTTAGTAATTATTAGCTATAGCGAAAGTCCTTTAGTAGTTGTCTTAAGTGGCAGTATGGAGCCTGCATTCCACCGAGGCGATGTGTTATATCTAACTAATTATCCTAATGAGCCCATCCGAGTCGGTGACATCGTTGTATTCAAAATTGAAGGGAGAGAAATTCCTATTGTCCATCGCGTTCTGAGACTGCACGAAAATGTCAACGGCAGCATCAAGTTTCTCACAAAGGGAGACAATAATCCCGTTCATGATCGTGGTTTGTATGCTCCTGGTCAGGATTGGCTGACACCATCCCATCTTATTGGACGGGCCAGAGGATTCATACCTTATGTTGGTCAAGTCACCCT]
[+] EMBL CD083352 [GGATTTATTTGATGACTTCAAACGTATGAACAAAAGACAGGTATACTATCAGCGTGTTAACCATTGGCTATGGTTGTAGCCTCTGCCCTAATGATCTGGAAGCTTTTAGTAATTATTAGCTATAGCGAAAGTCCTTTAGTAGTTGTCTTAAGTGGCAGTATGGAGCCTGCATTCCACCGAGGCGATGTGTTATATCTAACTAATTATCCTAATGAGCCCATCCGAGTCGGTGACATCGTTGTATTCAAAATTGAAGGGAGAGAAATTCCTATTGTCCATCGCGTTCTGAGACTGCACGAAAATGTCAACGGCAGCATCAAGTTTCTCACAAAGGGAGACAATAATCCCGTTCATGATCGTGGTTTGTATGCTCCTGGTCAGGATTGGCTGACACCATCCCATCTTATTGGACGGGCCAGAGGATTCATACCTTATGTTGGTCAAGTCACCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6278#1 -------------------------------GGACAAGTAGCTACTGAAGACATTGGTGG 29
consensus_6278#2 ------------------------------------------------------------
consensus_6278#0 AGGCCANAATTTGGCACGAGGTCAAGAGTGACCTTCGTTTTCAGTTGATAAGTTTTATGA 60
consensus_6278#3 ------------------------------------------------------------
consensus_6278#1 ATGTTTCGCTCAATTTCGTGGCTTGGTTGCTGTTGGACAT--TAATACCGTTGGATGCCG 87
consensus_6278#2 ------------------------------------------------------------
consensus_6278#0 ATGATTCTGTAAATTTTAACGAATGTCAAATCACAGTTCTGATGAAAGAATTTCGTGACG 120
consensus_6278#3 ------------------------------------------------------------
consensus_6278#1 GCTCAGTGGTTT---AGTGGTTAAGCGCTCGCACTCGAGACCGATAGACTCCGGGTTCGA 144
consensus_6278#2 ------------------------------------------------------------
consensus_6278#0 ATTAGGCAAATCTGAAGGTGTTACTTGTTACAGATTGACGCCAATCGATGTACCATTAAA 180
consensus_6278#3 ------------------------------------------------------------
consensus_6278#1 ATCTCCCCAGGCGGGATCGTGGATGCGCATTGCTGAGGAGTCCCATAATAGGACGAAACG 204
consensus_6278#2 ------------------------------------------------------------
consensus_6278#0 ATACAGGAACCTTAAATAGCTGTCTCACCTTAGTGCTGTACTCCTTTGTGGCATGCACTA 240
consensus_6278#3 ------------------------------------------------------------
consensus_6278#1 GCAGTCA-AACAGTGCTTCCAGGTTTTCCATGGTGGTTTAGCCTCAATTGATTCATGATC 263
consensus_6278#2 ------A-ATTTACATTTTTTCGTTCTCC-TGGTAACATAA--TAAATTCATTTATAATT 50
consensus_6278#0 AAAGTCCTGGTTGCGGTTACTAGCCTAATTTAG-AACATACATTGAGGAAATTACCGAAC 299
consensus_6278#3 ------------------------------------------------------------
consensus_6278#1 TCGACTATCAAATTTTCTATTGTACTTTGCCTTCACATTTGATTCATTAGTATTTGATAT 323
consensus_6278#2 TC-ACCAGAAACAAATTGATTAATCATT----TCATACT--GATCATGAGAATAAGA-AT 102
consensus_6278#0 TGCATCATGAAGCAAGCGTT--AACTTGGAATCCGGAAGGGAATCGGAAAAGAGGAAGGC 357
consensus_6278#3 ------------------------------------------------------------
consensus_6278#1 TGATGACATGA-ATGAAATGCCCCCCTCCTTTTTTTTTCTTATAAGATTATATGTATCTG 382
consensus_6278#2 AAATGGAATGAGATAGAAT------TTCATTTGTTATATGAATGAATTGATCATTATTTA 156
consensus_6278#0 AAAGAACACATTACGCCAGGA---AATGGAAACAGGTATGAAAATGATGAATAACAACTG 414
consensus_6278#3 ---------------------GGATTTATTTGATGACTTCAAACGTATGAACAAAAGACA 39
* * * * *
consensus_6278#1 TTTATCATTCATAAGTACGAACCTTTTTTGATAATCATATTGATTTTTATTCTGTCAATC 442
consensus_6278#2 TATGATTATGAGAAG-ATGGATTATTATTATTATTATTATTATTAACATTTGAGTCCATT 215
consensus_6278#0 TAAAGAACTGGAAAGGATTGCCCAGGACGGGTTTGAATGGAGAGTGCTGGTGGGTGGCTT 474
consensus_6278#3 GGTATACTATCAGCGTGTTAACCAT--TGGCTATGGTTGTAGCCTCTGCCCTAATGATCT 97
* * * *
consensus_6278#1 -TAAACA-GTATACATATTTATTTTCTTTT--TGGTTTACTTCAATT-TTAGAACATTTA 497
consensus_6278#2 GTATTCA-CTATACAAGATGATGATTCTGTAATGGAATTTGTCAAAT-TAAATATCCATA 273
consensus_6278#0 ATGTTCCTGCACTAGGGGTAACAGACGTAAGTAAGTTTACTACGACTATTCAGTTATATA 534
consensus_6278#3 GGAAGCT---TTTAGTAATTATTAGCTATAGCGAAAGTCCTTTAGTAGTTGTCTTAAGTG 154
* * * * * *
consensus_6278#1 AC---TGTACGTATAACACTCATTAAT--CCTATGCG-TATTCCATTAGTTTTCACTA-A 550
consensus_6278#2 ATAAATGAACAT-TAGTGAAAACTAAT--GGAATACG-CATAGGATTAATGAGTGTTATA 329
consensus_6278#0 ACATTCAATTCAATAACACTAGGAAACACGCAATCCT-CTTTAGGTCGATCATT-CGAGG 592
consensus_6278#3 GCAGTATGGAGCCTGCATTCCACCGAGGCGATGTGTTATATCTAACTAATTATCCTAATG 214
* * * * * *
consensus_6278#1 TGTTCATTTATTATGGATATTTAATTTGACAAATTCCATTACAGAATCATCATCTTGTAT 610
consensus_6278#2 CGTACA---GTTAAATGTTCTAAAATTGAAGTAAACCA--AAAAGAAAATAAATATGTAT 384
consensus_6278#0 AAAATACGAAGAAAGCACAGAAAAAAGCAGAGAATGCAACTCGAAGAACTAACAGAGAAA 652
consensus_6278#3 AGCCCA----TCCGAGTCGGTGACATCGTTGTATTCAAAATTGAAGGGAGAGAAATTCCT 270
* * * *
consensus_6278#1 AGTGAATACAATGGACTC-NAATGTTANNNTATATNNATATANNTATATCCATCTTCTCA 669
consensus_6278#2 ACTGTTTAGATTGA--CA-GAATAAAAATCAATATGATTATCAAAAAAGGTTCGTACTTA 441
consensus_6278#0 AAGGTGTGTCCAGGAATAAGAGAAACGATTTGAACTTGAAGCANAGCATGGGAATTATTA 712
consensus_6278#3 ATTGTCCATCGCGT--TCTGAGACTGCACGAAAATGTCAACGGCAGCATCAAGTTTCTCA 328
* * * * * * * * * *
consensus_6278#1 TAAATCATAT-AATAATGATCAATTCATTCATANTACANATGAAATNCTATCTCATTCCA 728
consensus_6278#2 TGAATGATA--AACA--GATACATATAATCTTATAAGAAA-AANAAGNGANGGGGGGGCA 496
consensus_6278#0 NTAGAAGAGA-AATA-CNNNACAGTCAGTGACAACGCTATGAAGGTCTTTNCTACTTNCA 770
consensus_6278#3 CAAAGGGAGACAATA--ATCCCGTTCATGATCGTGGTTTGTATGCTCCTGGTCAGGATTG 386
* ** * *
consensus_6278#1 TTTATTNCTATTCTCATGATCAGTATGAAATGATTAATCANNTTGTTNCTGGTGAANTAT 788
consensus_6278#2 TTT-----CATTCATGTCATCAATATCAAAT-ACTAATGAATCAAATGTGAAGGCAAAGT 550
consensus_6278#0 TATGGT----GGCAAGTCACAAATATGGTAACGTAGTCGAAGTATTCGACAGAGTAAAAT 826
consensus_6278#3 GCTGACACCATCCCATCTTATTGGACGGGCCAGAGGATTCATACCTTATGTTGGTCAAGT 446
* * * * *
consensus_6278#1 NANNNTGATTATATTGT-ACCCAGAGACGAAAAATGTAA------------- 826
consensus_6278#2 ACAATAGAAAATTTGAT-AGTC-GAGATCATGAA------------------ 582
consensus_6278#0 GGAATTAAAAACGANGTCAGCGAGGGATCTCTTTCACGAAATATATCATGTG 878
consensus_6278#3 CACCCT---------------------------------------------- 452
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||