cluster # 6280

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Schistosoma mansoni
cluster # 6280 cluster # 6280 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6280#0 length = 1098 sequences # 3

consensus_6280#1 length = 168 sequences # 1

consensusID : consensus_6280#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1098
fasta sequence

                              [AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGCTCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAGAGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACCTGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAATGATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAACAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGTTTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACACGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCCATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCAACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCACGAATTAACAGGCCAT-CGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCCAGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAGTTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTCCCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGCCAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGAGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGAACTCTGCAAGCCACAGGC]

[-] EMBL CD192318             [AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGCTCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAGAGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD185694             [                                                                                                         TGATCCAGTCGAAAGAGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACCTGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAATGATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAACAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGTTTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACACGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCCATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCAACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCACGAATTAACAGGCCAT CGAAAAAGTCATCAACCAACGACGCTATATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD136718             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGGAAGCAACGCAGTCGGCTACAATACTATCCGATTCAGTTTTTACAAACAGCATTACACGGAGTGCACGAATTAACAGGCCATNCGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCCAGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAGTTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTCCCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGCCAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGAGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGAACTCTGCAAGCCACAGGC]




>consensus_6280#0
AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGC
TCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAG
AGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACC
TGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAAT
GATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAA
CAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGT
TTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACA
CGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCC
ATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCA
ACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCA
CGAATTAACAGGCCATCGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCC
AGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAG
TTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTC
CCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGC
CAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGC
GAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACC
ACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGA
GGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGA
ACTCTGCAAGCCACAGGC

consensusID : consensus_6280#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [ATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGACAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATTAGGTTCAAGGGGGCGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT]

[-] EMBL CD121122             [ATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGACAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATTAGGTTCAAGGGGGCGGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT]




>consensus_6280#1
ATGCGCCAATAGACACAATGTTTTTCAGCGAACCTTCATTACAGCAGACAATAGACTCAG
ATCCGCCGTTTTCTCCGCACAAATTAACCACCTGATTAGGTTCAAGGGGGCGGGAAATAT
ATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6280#0      AATACAAACTCCTGTTGTCGTCGTTGCCTATAATCAGTCCTGGGAAGAAATGACTGATGC 60
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      TCTTTTGAGTTTTCTAATAAACAGTCATTGAAAAATTCGTCAGATTGATCCAGTCGAAAG 120
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      AGTATAGTTTGAAGATTCATAATAGCATCAGATATATGTATTTGTAATGGTCGAATAACC 180
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      TGGGGGAAAATTTTGGAGTCTTTTAAACGTTCAGCAACACGAACAATCTGATCAATGAAT 240
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      GATAGCCAGTATTTATCAAAAGCAGTCCATAACAAAAAACATGTGGACAAACGACTAAAA 300
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      CAACTATGTCGACAAATGAGAGGTTGGATTACTCCTGAACATAAATTACAGTAACGTAGT 360
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      TTAATCCATTCATTTATACAACTATCATTCACTGCTATCTTTGATAAAACCTGAACCACA 420
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      CGATCTCCTAAAAGAAGACCATTCCTAAGAATCCTGGAAGGAGGAAATGCGCGAGTTGCC 480
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      ATAACTCTTATTATTTCGGGCGCTTGATCAAATGGCTTCATAGGTCTTAGCTTGGAAGCA 540
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      ACGCAGTCGGCTACAATACTATCCGGTTCAGTTTTTACAAACAGCATTACACGGAGTGCA 600
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      CGAATTAACAGGCCATCGAAAAAGTCATCAACCAACGACGCTATATTTTGCCGGTTTCCC 660
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      AGCATGTAACTTTCCAGTTCACGGAAGAATGCCTCAACGAAATCCTTGTTTTGATCATAG 720
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      TTATATCCGTAGGAGTTTACAAAGAGATCATGGAAACTTTGCAATGTTAGTTTTAAACTC 780
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      CCTAACATGTAGTCTTGCAGATAATGAGCATCTTCTCTTAAATTCTGACTTATGTTAAGC 840
consensus_6280#1      ------------------------------------------------------------
                                                                                  

consensus_6280#0      CAGAATATGCGCCAGTGCTCAGTGAATTCGAATGCGCCAATAGACACAATGTTTTTCAGC 900
consensus_6280#1      -------------------------------ATGCGCCAATAGACACAATGTTTTTCAGC 29
                                                     *****************************

consensus_6280#0      GAACCTTCATTACAGCAGTCAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACC 960
consensus_6280#1      GAACCTTCATTACAGCAGACAATAGACTCAGATCCGCCGTTTTCTCCGCACAAATTAACC 89
                      ****************** *****************************************

consensus_6280#0      ACCTGATCTAAAGATAACAAAATGCGGCTNTAACATAAGCGTTACTAGGTTCAAGAGGGA 1020
consensus_6280#1      ACCTGAT--------------------------------------TAGGTTCAAGGGGGC 111
                      *******                                      ********** *** 

consensus_6280#0      GGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCTTGA 1080
consensus_6280#1      GGGAAATATATCTATTTATGATTTCTCTAGCCAACATGCAATGTGAGTCAACACTCT--- 168
                      *********************************************************   

consensus_6280#0      ACTCTGCAAGCCACAGGC 1098
consensus_6280#1      ------------------