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Schistosoma mansoni
cluster # 6281 cluster # 6281       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6281#0 length = 663 sequences # 2  
consensus_6281#1 length = 428 sequences # 2  

consensusID : consensus_6281#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 663
fasta sequence
                              [GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGAATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGATTGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACTCAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATATTT]

[+] EMBL CD091735             [GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGAATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGATTGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACTCAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATC                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD184709             [                                                                                                                                                                                                                                 TACTCC AGGTTCTTTCTTGTACAGAAAATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATATTT]


>consensus_6281#0 GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGA ATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGAT TGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACT CAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGT TCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATAT TTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGA ATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTC TGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGA AAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGT TTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATG AGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATA TTT



consensusID : consensus_6281#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 428
fasta sequence
                              [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCGTAACTTTAACCAACAGTGTATAACTTCACTTAA-GGTATTACGACCCAGCTACTCTTATTGTTTAATAA]

[+] EMBL AI395285             [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCGTAACTTTAACCAACAGTGTATAACTTCACTTAA GGTATTACGACCCAGCTACTCTTATTGTTTAATAA]
[+] EMBL AI395284             [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCCGTCGTAACTTTAACCAACAGTGTATAACTCCACTTAAGGGTA TACGACCCA                     ]


>consensus_6281#1 TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAA ATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCA TTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTT CCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCG ACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTA AAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCG TAACTTTAACCAACAGTGTATAACTTCACTTAAGGTATTACGACCCAGCTACTCTTATTG TTTAATAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6281#0      GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGA 60
consensus_6281#1      ------------------------------------------------------------
                                                                                  

consensus_6281#0      ATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGAT 120
consensus_6281#1      ------------------------------------------------------------
                                                                                  

consensus_6281#0      TGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACT 180
consensus_6281#1      ------------------------------------------------------------
                                                                                  

consensus_6281#0      CAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAA---TACTCCAAGGTT 237
consensus_6281#1      ---------------TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTT 45
                                                *     **********  *   ******* ****

consensus_6281#0      TGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCA 297
consensus_6281#1      CGTT-TTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGA 104
                       *** ********** ************************ ***************** *

consensus_6281#0      TATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTT 357
consensus_6281#1      TATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTT 164
                      *************** ***************** ***** * ****** ***********

consensus_6281#0      GGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGAC 417
consensus_6281#1      GGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGG------------ 212
                      ***** ************ ******************* ***** ***            

consensus_6281#0      CTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGC 477
consensus_6281#1      ------AGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACT 266
                            **************** * ******* ***********    **** ** *   

consensus_6281#0      CGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTT 537
consensus_6281#1      TTAATATCATAGTATTAGAT--TTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTAT 324
                        ** *    * * **   *  *  **   *  ****    **  *  * * *    * *

consensus_6281#0      GGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAA 597
consensus_6281#1      G--TTGCATTGATATTCTAATCTGTAA--TCTATCGGCCGTA--ACTTTAA---CCAACA 375
                      *  ** * *  * **  * ** *  **  * * ****  **   * ** **   *  * *

consensus_6281#0      ATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAA 657
consensus_6281#1      GTGTATA-ACTTCACTTAAGGTATTACGACCCAGCTACTCTTATTGTTTAATAA------ 428
                       **   * * **    **  ** * *  * ** * **   **    ** ** **      

consensus_6281#0      ATATTT 663
consensus_6281#1      ------
                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)