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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence
[GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGAATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGATTGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACTCAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATATTT]
[+] EMBL CD091735 [GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGAATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGATTGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACTCAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATC ]
[+] EMBL CD184709 [ TACTCC AGGTTCTTTCTTGTACAGAAAATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATATTT]
consensusID : consensus_6281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence
[TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCGTAACTTTAACCAACAGTGTATAACTTCACTTAA-GGTATTACGACCCAGCTACTCTTATTGTTTAATAA]
[+] EMBL AI395285 [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCGTAACTTTAACCAACAGTGTATAACTTCACTTAA GGTATTACGACCCAGCTACTCTTATTGTTTAATAA]
[+] EMBL AI395284 [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCCGTCGTAACTTTAACCAACAGTGTATAACTCCACTTAAGGGTA TACGACCCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6281#0 GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGA 60
consensus_6281#1 ------------------------------------------------------------
consensus_6281#0 ATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGAT 120
consensus_6281#1 ------------------------------------------------------------
consensus_6281#0 TGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACT 180
consensus_6281#1 ------------------------------------------------------------
consensus_6281#0 CAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAA---TACTCCAAGGTT 237
consensus_6281#1 ---------------TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTT 45
* ********** * ******* ****
consensus_6281#0 TGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCA 297
consensus_6281#1 CGTT-TTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGA 104
*** ********** ************************ ***************** *
consensus_6281#0 TATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTT 357
consensus_6281#1 TATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTT 164
*************** ***************** ***** * ****** ***********
consensus_6281#0 GGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGAC 417
consensus_6281#1 GGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGG------------ 212
***** ************ ******************* ***** ***
consensus_6281#0 CTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGC 477
consensus_6281#1 ------AGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACT 266
**************** * ******* *********** **** ** *
consensus_6281#0 CGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTT 537
consensus_6281#1 TTAATATCATAGTATTAGAT--TTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTAT 324
** * * * ** * * ** * **** ** * * * * * *
consensus_6281#0 GGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAA 597
consensus_6281#1 G--TTGCATTGATATTCTAATCTGTAA--TCTATCGGCCGTA--ACTTTAA---CCAACA 375
* ** * * * ** * ** * ** * * **** ** * ** ** * * *
consensus_6281#0 ATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAA 657
consensus_6281#1 GTGTATA-ACTTCACTTAAGGTATTACGACCCAGCTACTCTTATTGTTTAATAA------ 428
** * * ** ** ** * * * ** * ** ** ** ** **
consensus_6281#0 ATATTT 663
consensus_6281#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||