These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGAATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGATTGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACTCAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATATTT] [+] EMBL CD091735 [GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGAATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGATTGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACTCAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAATACTCCAAGGTTTGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATC ] [+] EMBL CD184709 [ TACTCC AGGTTCTTTCTTGTACAGAAAATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCATATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTTGGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGACCTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGCCGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTTGGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAAATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAAATATTT] consensusID : consensus_6281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCGTAACTTTAACCAACAGTGTATAACTTCACTTAA-GGTATTACGACCCAGCTACTCTTATTGTTTAATAA] [+] EMBL AI395285 [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCGGCCGTAACTTTAACCAACAGTGTATAACTTCACTTAA GGTATTACGACCCAGCTACTCTTATTGTTTAATAA] [+] EMBL AI395284 [TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTTCGTTTTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGATATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTTGGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGGAGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACTTTAATATCATAGTATTAGATTTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTATGTTGCATTGATATTCTAATCTGTAATCTATCCGTCGTAACTTTAACCAACAGTGTATAACTCCACTTAAGGGTA TACGACCCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6281#0 GTTTCTGAGAAGCTTTTATTTAATATGGATTGAATAAAATATTTTCTTGAGTCTTCTGGA 60 consensus_6281#1 ------------------------------------------------------------ consensus_6281#0 ATTTTGACGAGGGTTATTTCAGTACTTCTTAACATTAACCTCTTGATAAGTCTTGTCGAT 120 consensus_6281#1 ------------------------------------------------------------ consensus_6281#0 TGAACGCTATATTCGTTTTCCTAAGCTATTCTGGTAACCCACAGGCTAGAACTAACTACT 180 consensus_6281#1 ------------------------------------------------------------ consensus_6281#0 CAGCGACTTGAACACCAGAGAGAAGATACAAGTATGAGAGAAGAA---TACTCCAAGGTT 237 consensus_6281#1 ---------------TTTTTTTTTTTTTTTTTTATGAGAGAAACACTTTACTCCAGGGTT 45 * ********** * ******* **** consensus_6281#0 TGTTCTTGTACAGAAGATCATGGGTATTTATAGATGTTAGCGTCTGTTAAATCAACATCA 297 consensus_6281#1 CGTT-TTGTACAGAAAATCATGGGTATTTATAGATGTTAGTGTCTGTTAAATCAACATGA 104 *** ********** ************************ ***************** * consensus_6281#0 TATTTCAGCCAATCCGTTAACGACATATTATGCCACCGATCGATAGTAGCACGCCACGTT 357 consensus_6281#1 TATTTCAGCCAATCCATTAACGACATATTATGCTACCGACCAATAGTAACACGCCACGTT 164 *************** ***************** ***** * ****** *********** consensus_6281#0 GGAATTCTAGAATGTTCCGTCATACTCTGATTGGCTAGGGCTCTTCGGCTCCTTTTGGAC 417 consensus_6281#1 GGAATCCTAGAATGTTCCATCATACTCTGATTGGCTAGAGCTCTCCGG------------ 212 ***** ************ ******************* ***** *** consensus_6281#0 CTCTGGAGGCTCCGTTGAAGTTCTCCGGAAGCTGACTCAACACTTTGAAAATGAATTCGC 477 consensus_6281#1 ------AGGCTCCGTTGAAGTTTTTCGGAAGCCGACTCAACACTACCCAAATAAAATACT 266 **************** * ******* *********** **** ** * consensus_6281#0 CGAAAAGAGAACTCTTCTCTGATCCAATCTTTCTTAATTCATGTCTCAATGGGTTTATTT 537 consensus_6281#1 TTAATATCATAGTATTAGAT--TTAAAAAATGATTAAAAACTGAATAGAAGAGCCATTAT 324 ** * * * ** * * ** * **** ** * * * * * * consensus_6281#0 GGTTTACTTAAAAATGATCATGTTGAAGTTTTCTCGGAGGTGCTATTTCAATTTCTTAAA 597 consensus_6281#1 G--TTGCATTGATATTCTAATCTGTAA--TCTATCGGCCGTA--ACTTTAA---CCAACA 375 * ** * * * ** * ** * ** * * **** ** * ** ** * * * consensus_6281#0 ATGAGAACAATTGTTATACTGTTTCAAAAACCCGGTATAGTTCAACTTGAAAAAGCATAA 657 consensus_6281#1 GTGTATA-ACTTCACTTAAGGTATTACGACCCAGCTACTCTTATTGTTTAATAA------ 428 ** * * ** ** ** * * * ** * ** ** ** ** ** consensus_6281#0 ATATTT 663 consensus_6281#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||