These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6300#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGTTCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCATNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCGTCGTGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGGCATTCCGGACGCGTTTCTAGTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAACCAAGTCTCCGGACAACAAACGTTCACGTGACATCTCACCGCGTCGACACTCAAGGTCACCAGTCATAACGCGTACTGATCGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNNNNNAAAAGCTGAATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTATCGTCAAATCACCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCATATGCGGAAATTATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAGATCATCTTAG] [+] EMBL CD080989 [GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGTTCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCATNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCGTCGTGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGGCATTCCGGACGCGTTTCTAGTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAACCAAGTCTCCGGACAACAAACGTTCACGTGACATCTCACCGCGTCGACACTCAAGGTCACCAGTCATAACGCGTACTGATCGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNNNNNAAAAGCTGAATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTATCGTCAAATCACCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCATATGCGGAAATTATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAGATCATCTTAG] consensusID : consensus_6300#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTCAGCAACTCCACATCCTTTCCCACTTAGCACACGCTTAGGGGCCTTAGTTGATGGTCTGGGCTGTTTCCCTCTCGACAATGAAGCTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGTTTAGCTAACGTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGCAAGAAACATGTAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACAGAGTTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCCCAGTTTTCAACCTAGGTGGGTTCGGTCCTCCACACGCTCTTACACGTGCTTCAACCTGGCCATGGATAGATCACTCCGCTTCGGGTCTAGATCCTGCCACTACAACGCCCTGTTCAGACTCGCTN] [+] EMBL CD160588 [CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTCAGCAACTCCACATCCTTTCCCACTTAGCACACGCTTAGGGGCCTTAGTTGATGGTCTGGGCTGTTTCCCTCTCGACAATGAAGCTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGTTTAGCTAACGTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGCAAGAAACATGTAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACAGAGTTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCCCAGTTTTCAACCTAGGTGGGTTCGGTCCTCCACACGCTCTTACACGTGCTTCAACCTGGCCATGGATAGATCACTCCGCTTCGGGTCTAGATCCTGCCACTACAACGCCCTGTTCAGACTCGCTN] consensusID : consensus_6300#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [AAGGTACATTTGTTTATACAAAGTGCGTTTGAGTTAGTAAGGGTAGTCAATATGTTTTTTCTAATTAGTAGTAGTATGGATTAAATATTTGAAGGAGATTGGAAAATCTACACACAAGAAAACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACGCAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTTTATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAAAAGCCCAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGGATATATGAACAAGTGAAACAGGACATTTTAAATACAAAAAAAATAAAGGGTTTATATATATATATATATATATATATATAAATGTTGGTATCTTCTACTGGTATTTTATACATGAGTAG] [+] EMBL CD077107 [AAGGTACATTTGTTTATACAAAGTGCGTTTGAGTTAGTAAGGGTAGTCAATATGTTTTTTCTAATTAGTAGTAGTATGGATTAAATATTTGAAGGAGATTGGAAAATCTACACACAAGAAAACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACGCAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTTTATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAAAAGCCCAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGGATATATGAACAAGTGAAACAGGACATTTTAAATACAAAAAAAATAAAGGGTTTATATATATATATATATATATATATATAAATGTTGGTATCTTCTACTGGTATTTTATACATGAGTAG] [+] EMBL CD156531 [ AACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACGCAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTTTATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAGAAGCCCAAATTTAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6300#1 ---CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTT 57 consensus_6300#2 ------------------------------------------------------------ consensus_6300#0 GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGT 60 consensus_6300#1 TCAAGGATGGCTGCTTCTA-AGCCAAC--CTCCTGGTTGTCTCAGCAACTCCACAT-CCT 113 consensus_6300#2 -AAGGTACATTTGTTTATACAAAGTGC--GTTTGAGTTAGTAAGGGTAGTCAATATGTTT 57 consensus_6300#0 TCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCAT---N 117 * * * * * * * * ** consensus_6300#1 TTCCCACTTAGCACACGCTTAGGGGCCTTAGTTGATGGTC--TGGGCTGTTTCCCTCTCG 171 consensus_6300#2 TTTCTAATTAGTAGTAGTATGGATTAAATATTTGAAGG----AGATTGGAAAATCTACAC 113 consensus_6300#0 NNNNNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCG 177 * ** * * * consensus_6300#1 ACAATGAAGCTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGT 231 consensus_6300#2 ACAAGAAAAC--ACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAA 171 consensus_6300#0 TCGTGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGG--CATTCCGGACGC 235 * * * * * * ** * consensus_6300#1 TTAGCTA-ACGTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGC 290 consensus_6300#2 ACAACCACGCAATAG-AACAATTATAGAAGAACCGAAAACCCAACA--TTGAATTACAGC 228 consensus_6300#0 GTTTCTA-GTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAA--CCAAGTCTCCGG 292 * * * * * * * * * * consensus_6300#1 --AAGAAACATGTAACGCTGCACCTAAATGCATTTCGGGGAGAAC-----CAGCTA-TCA 342 consensus_6300#2 GTATAAAGTTTTTATAGCCAAATTT---TACAATTACGGAAGAATATTCACAGTAAATCA 285 consensus_6300#0 ACAACAAACGTTCA-CGTGACATCTCACCGCGTCGACACTCAAGG-TCACCAGTCA-TAA 349 * ** * * * * * * * *** * * * consensus_6300#1 CAGAGTTTGATTGGC-C---TTTCACCCCTATCCACAGCTCATCCCC-CCAGTTTTCAAC 397 consensus_6300#2 CGCCATTTAAAAGCC-CAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGG 344 consensus_6300#0 CGCGTACTGATCGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNN 409 * * * * * ** * * consensus_6300#1 CTAGGTGGGTTCGGTCCTCCACAC------GCTCT---TACACGTGCTTCAACCTGGCCA 448 consensus_6300#2 ATATATGAACAAGTGAAACAGGAC------ATTTTAAATACAAAAAAAATAAAGGGTTTA 398 consensus_6300#0 NNNAAAAGCTGAATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTA 469 * * * * * * * * consensus_6300#1 TGGATAGATCACT--CCGCTTCGGGTCTAGATCCTGCCA-CTACAACGCCCTGTTCAGAC 505 consensus_6300#2 TATATATAT-ATA--TATATATATATATAAATGTTGGTATCTTCTACTGGTATTTTATAC 455 consensus_6300#0 TCGTCAAATCACCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCAT 529 * * ** * * * * * * * consensus_6300#1 TCGCTN------------------------------------------------------ 511 consensus_6300#2 ATGAGTAG---------------------------------------------------- 463 consensus_6300#0 ATGCGGAAATTATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAG 589 * consensus_6300#1 ---------- consensus_6300#2 ---------- consensus_6300#0 ATCATCTTAG 599 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||